M. domestica Gene: TRIM13 - ENSMODG00000024106 - Monodelphis domestica (opossum)

General information

Ensembl IDENSMODG00000024106
NameTRIM13
Descriptiontripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
OrganismMonodelphis domestica (opossum)
Synonym(s)dleu5, leu5, rfp2, rnf77
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0018241prime adult stage
1.11e3
  • 1.11e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
1.58e3
  • 1.58e3
  • 1.61e3
  • 1.93e3
92.72
  • 92.72
  • 92.59
  • 91.10
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0018241prime adult stage
1.74e3
  • 1.74e3
91.95
  • 91.95
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.50e3
  • 3.50e3
83.84
  • 83.84
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.63e3
  • 3.63e3
83.26
  • 83.26
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.69e3
  • 3.69e3
  • 7.87e3
  • 8.48e3
82.97
  • 82.97
  • 63.68
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005631extraembryonic membrane
  • UBERON:0000068embryo stage
3.80e3
  • 3.80e3
82.47
  • 82.47
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
4.32e3
  • 4.32e3
  • 4.34e3
80.08
  • 80.08
  • 79.98
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0018685nursing stage
  • UBERON:0007221neonate stage
4.76e3
  • 4.76e3
  • 5.80e3
78.01
  • 78.01
  • 73.23
AEIR
  • AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • UBERON:0018685nursing stage
5.60e3
  • 5.60e3
74.14
  • 74.14
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
5.95e3
  • 5.95e3
72.52
  • 72.52
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.97e3
  • 5.97e3
  • 6.66e3
  • 6.76e3
72.45
  • 72.45
  • 69.26
  • 68.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
6.79e3
  • 6.79e3
68.66
  • 68.66
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.90e3
  • 6.90e3
  • 6.97e3
  • 7.33e3
68.13
  • 68.13
  • 67.82
  • 66.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
7.15e3
  • 7.15e3
67.00
  • 67.00
AEIR
  • AEIR
UBERON:0000459uterine wall
  • UBERON:0018241prime adult stage
7.29e3
  • 7.29e3
66.35
  • 66.35
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
7.40e3
  • 7.40e3
65.82
  • 65.82
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
7.70e3
  • 7.70e3
  • 8.06e3
64.45
  • 64.45
  • 62.80
AEIR
  • AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
7.79e3
  • 7.79e3
  • 8.17e3
64.02
  • 64.02
  • 62.30
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.82e3
  • 7.82e3
  • 8.37e3
  • 8.96e3
63.91
  • 63.91
  • 61.35
  • 58.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
9.23e3
  • 9.23e3
57.38
  • 57.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSMODG00000024106.

Cross-references

EnsemblENSMODG00000024106 (TRIM13)
HGNCHGNC:9976 (TRIM13)
Uniprot/SPTREMBLF6WKK5, F6WKK5_MONDO

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