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M. musculus Gene: Hoxc11 - ENSMUSG00000001656 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000001656
NameHoxc11
Descriptionhomeobox C11 [Source:MGI Symbol;Acc:MGI:96193]
OrganismMus musculus (mouse)
Synonym(s)b9ei74, hox-3.7, hoxc-11
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.36e3
  • 1.36e3
  • 2.08e3
  • 2.52e3
  • 7.82e3
96.74
  • 96.74
  • 95.00
  • 93.97
  • 81.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.37e3
  • 2.37e3
  • 9.47e3
  • 1.11e4
  • 1.67e4
94.32
  • 94.32
  • 77.27
  • 73.33
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
4.54e3
  • 4.54e3
  • 1.04e4
  • 1.04e4
  • 1.17e4
  • 1.25e4
89.11
  • 89.11
  • 75.00
  • 75.00
  • 71.87
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000104life cycle
5.21e3
  • 5.21e3
  • 1.65e4
87.50
  • 87.50
  • 60.49
AEIR
  • AEIR
  • AEIR
UBERON:0003918kidney mesenchyme
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
5.21e3
  • 5.21e3
  • 6.95e3
  • 8.34e3
  • 1.19e4
  • 1.39e4
87.50
  • 87.50
  • 83.33
  • 80.00
  • 71.43
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002103hindlimb
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
5.21e3
  • 5.21e3
  • 1.67e4
87.50
  • 87.50
  • 59.99
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
5.21e3
  • 5.21e3
  • 9.73e3
  • 1.47e4
  • 1.83e4
87.50
  • 87.50
  • 76.66
  • 64.69
  • 56.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
6.42e3
  • 6.42e3
  • 7.40e3
  • 9.61e3
84.60
  • 84.60
  • 82.24
  • 76.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010890pelvic complex muscle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
6.95e3
  • 6.95e3
  • 6.95e3
83.33
  • 83.33
  • 83.33
AEIR
  • AEIR
  • AEIR
UBERON:0013247male paramesonephric duct
  • MmusDv:0000029Theiler stage 22 (mouse)
6.95e3
  • 6.95e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
7.15e3
  • 7.15e3
  • 9.63e3
82.83
  • 82.83
  • 76.89
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:0000061early adult stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
7.36e3
  • 7.36e3
  • 7.82e3
  • 8.12e3
82.33
  • 82.33
  • 81.25
  • 80.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003412pelvic appendage bud mesenchyme
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
7.82e3
  • 7.82e3
  • 1.49e4
81.25
  • 81.25
  • 64.28
AEIR
  • AEIR
  • AEIR
UBERON:0001333male urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
8.68e3
  • 8.68e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
8.93e3
  • 8.93e3
  • 9.09e3
  • 9.81e3
  • 1.49e4
  • 2.08e4
78.57
  • 78.57
  • 78.19
  • 76.45
  • 64.28
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
8.98e3
  • 8.98e3
78.44
  • 78.44
AEIR
  • AEIR
EMAPA:28533male associated reproductive structure (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
9.26e3
  • 9.26e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0004122genitourinary system
  • MmusDv:0000024Theiler stage 17 (mouse)
9.26e3
  • 9.26e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
75.75
  • 75.75
AEIR
  • AEIR
EMAPA:17675lumbar vertebral cartilage condensation (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.04e4
  • 1.04e4
  • 1.04e4
75.00
  • 75.00
  • 75.00
AEIR
  • AEIR
  • AEIR
EMAPA:17700tail spinal cord (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.04e4
  • 1.04e4
  • 1.39e4
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
EMAPA:17970nephric duct of male, mesonephric portion (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.04e4
  • 1.04e4
  • 1.25e4
75.00
  • 75.00
  • 70.00
AEIR
  • AEIR
  • AEIR
EMAPA:31565nerve of pelvic urethra of male (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003890Mullerian duct
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
  • 1.56e4
  • 2.08e4
75.00
  • 75.00
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011094vertebra cartilage element
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
1.04e4
  • 1.04e4
  • 1.04e4
  • 1.25e4
75.00
  • 75.00
  • 75.00
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.06e4
  • 1.06e4
  • 1.11e4
  • 1.38e4
  • 1.50e4
74.61
  • 74.61
  • 73.34
  • 66.80
  • 64.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
EMAPA:17246handplate ectoderm (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.25e4
  • 1.25e4
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.37e4
  • 1.37e4
  • 1.39e4
  • 1.42e4
  • 1.47e4
  • 1.60e4
67.04
  • 67.04
  • 66.77
  • 65.91
  • 64.69
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003074mesonephric duct
  • MmusDv:0000028Theiler stage 21 (mouse)
1.39e4
  • 1.39e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003599tail connective tissue
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.39e4
  • 1.39e4
  • 2.08e4
66.66
  • 66.66
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
66.31
  • 66.31
AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.41e4
  • 1.41e4
  • 1.55e4
66.22
  • 66.22
  • 62.77
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.43e4
  • 1.43e4
  • 1.69e4
  • 1.86e4
65.66
  • 65.66
  • 59.56
  • 55.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 2.50e4
65.61
  • 65.61
  • 40.04
AEIR
  • AEIR
  • AEIR
UBERON:0003860hindlimb mesenchyme
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.56e4
  • 1.56e4
  • 2.08e4
  • 2.08e4
62.50
  • 62.50
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011095vertebra pre-cartilage condensation
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.56e4
  • 1.56e4
  • 1.56e4
  • 2.08e4
62.50
  • 62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
1.73e4
  • 1.73e4
  • 2.12e4
  • 2.54e4
58.52
  • 58.52
  • 49.15
  • 39.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
  • 1.87e4
55.72
  • 55.72
  • 55.07
AEIR
  • AEIR
  • AEIR
UBERON:0001040yolk sac
  • MmusDv:0000023Theiler stage 16 (mouse)
1.92e4
  • 1.92e4
53.99
  • 53.99
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
1.95e4
  • 1.95e4
53.28
  • 53.28
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
2.00e4
  • 2.00e4
51.90
  • 51.90
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
2.06e4
  • 2.06e4
  • 3.03e4
50.67
  • 50.67
  • 27.24
AEIR
  • AEIR
  • AEIR
EMAPA:32621hindlimb epithelium (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
2.08e4
  • 2.08e4
  • 2.08e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
EMAPA:32636hindlimb epidermis (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003532hindlimb skin
  • MmusDv:0000032Theiler stage 23 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000164primitive urogenital sinus
  • MmusDv:0000026Theiler stage 19 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003373ectoderm of footplate
  • MmusDv:0000026Theiler stage 19 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003531forelimb skin
  • MmusDv:0000032Theiler stage 23 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
2.24e4
  • 2.24e4
46.19
  • 46.19
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.34e4
  • 2.34e4
43.96
  • 43.96
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.49e4
  • 2.49e4
  • 2.92e4
  • 3.48e4
40.29
  • 40.29
  • 30.00
  • 16.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • MmusDv:0000032Theiler stage 23 (mouse)
3.10e4
  • 3.10e4
25.63
  • 25.63
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.17e4
  • 3.17e4
23.94
  • 23.94
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
3.19e4
  • 3.19e4
23.45
  • 23.45
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
3.24e4
  • 3.24e4
22.28
  • 22.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires5 species5 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species17 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000001656.

Cross-references

CCDSCCDS27892 (CCDS27892.1)
EnsemblENSMUSG00000001656 (Hoxc11)
MGIMGI:96193 (Hoxc11)
EMBLAC160979, BC139233, BC139269, CH466550
Uniprot/SWISSPROTHXC11_MOUSE, P31313

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