M. musculus Gene: Foxn1 - ENSMUSG00000002057 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000002057
NameFoxn1
Descriptionforkhead box N1 [Source:MGI Symbol;Acc:MGI:102949]
OrganismMus musculus (mouse)
Synonym(s)d11bhm185e, fkh19, hfh-11, hfh11, nu, nude, whn

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005562thymus primordium
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
4.14e3
  • 4.14e3
  • 6.91e3
  • 1.24e4
90.00
  • 90.00
  • 83.33
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
4.36e3
  • 4.36e3
  • 1.82e4
89.47
  • 89.47
  • 56.03
AEIR
  • AEIR
  • AEIR
UBERON:0001068skin of back
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000539 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
4.46e3
  • 4.46e3
  • 5.31e3
  • 8.87e3
  • 9.30e3
  • 9.91e3
  • 1.03e4
  • 1.23e4
  • 1.30e4
  • 1.37e4
  • 1.73e4
  • 1.75e4
  • 1.80e4
  • 1.81e4
  • 1.83e4
  • 1.92e4
89.23
  • 89.23
  • 87.18
  • 78.59
  • 77.56
  • 76.07
  • 75.13
  • 70.42
  • 68.64
  • 66.89
  • 58.30
  • 57.68
  • 56.65
  • 56.21
  • 55.93
  • 53.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000076aged adult stage (mouse)
4.71e3
  • 4.71e3
  • 1.79e4
  • 2.18e4
  • 2.30e4
  • 2.30e4
  • 2.48e4
  • 2.53e4
  • 2.57e4
88.63
  • 88.63
  • 56.80
  • 47.43
  • 44.43
  • 44.42
  • 40.06
  • 38.97
  • 38.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
4.91e3
  • 4.91e3
88.15
  • 88.15
AEIR
  • AEIR
UBERON:0005942hair outer root sheath
  • UBERON:0000112sexually immature stage
5.18e3
  • 5.18e3
87.50
  • 87.50
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
5.40e3
  • 5.40e3
  • 1.71e4
  • 2.48e4
86.95
  • 86.95
  • 58.68
  • 40.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
5.75e3
  • 5.75e3
86.11
  • 86.11
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
6.59e3
  • 6.59e3
  • 1.71e4
  • 1.77e4
  • 2.00e4
  • 2.47e4
  • 2.54e4
84.09
  • 84.09
  • 58.81
  • 57.39
  • 51.72
  • 40.48
  • 38.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002077cortex of hair
  • UBERON:0000112sexually immature stage
6.90e3
  • 6.90e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0000112sexually immature stage
6.91e3
  • 6.91e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0002073hair follicle
  • MmusDv:00000451 week (mouse)
7.01e3
  • 7.01e3
83.09
  • 83.09
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
7.25e3
  • 7.25e3
  • 2.51e4
82.50
  • 82.50
  • 39.39
AEIR
  • AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0000112sexually immature stage
7.40e3
  • 7.40e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0002360meninx
  • UBERON:0000112sexually immature stage
7.53e3
  • 7.53e3
81.82
  • 81.82
AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0000112sexually immature stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
8.29e3
  • 8.29e3
  • 1.43e4
  • 2.07e4
80.00
  • 80.00
  • 65.38
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003534tail skin
  • MmusDv:0000061early adult stage
8.38e3
  • 8.38e3
79.77
  • 79.77
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
8.53e3
  • 8.53e3
  • 1.55e4
  • 2.47e4
79.41
  • 79.41
  • 62.49
  • 40.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001690ear
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
8.57e3
  • 8.57e3
  • 1.55e4
79.32
  • 79.32
  • 62.66
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000112sexually immature stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
8.58e3
  • 8.58e3
  • 8.88e3
  • 1.00e4
  • 1.24e4
  • 1.28e4
  • 1.30e4
  • 1.40e4
79.29
  • 79.29
  • 78.57
  • 75.76
  • 70.00
  • 69.05
  • 68.66
  • 66.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000622 month-old stage (mouse)
8.88e3
  • 8.88e3
  • 1.31e4
  • 2.00e4
  • 2.24e4
78.57
  • 78.57
  • 68.47
  • 51.77
  • 45.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005943hair root sheath matrix
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0010026ventral part of pharyngeal pouch 3
  • MmusDv:0000026Theiler stage 19 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
EMAPA:35865thymus/parathyroid primordium (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005659primary palate epithelium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000112sexually immature stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
1.05e4
  • 1.05e4
  • 1.09e4
  • 1.22e4
  • 1.24e4
  • 1.42e4
  • 1.58e4
  • 1.76e4
  • 1.91e4
  • 2.37e4
  • 2.56e4
74.57
  • 74.57
  • 73.72
  • 70.62
  • 70.00
  • 65.61
  • 61.97
  • 57.61
  • 53.84
  • 42.88
  • 38.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000032Theiler stage 23 (mouse)
1.18e4
  • 1.18e4
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:0000032Theiler stage 23 (mouse)
1.29e4
  • 1.29e4
68.75
  • 68.75
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
68.49
  • 68.49
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0007221neonate stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.38e4
  • 1.38e4
  • 1.93e4
  • 2.17e4
  • 2.18e4
  • 2.24e4
  • 2.28e4
  • 2.32e4
  • 2.48e4
  • 2.54e4
66.74
  • 66.74
  • 53.39
  • 47.59
  • 47.29
  • 46.01
  • 44.91
  • 44.11
  • 40.18
  • 38.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001803epithelium of lens
  • MmusDv:0000028Theiler stage 21 (mouse)
1.38e4
  • 1.38e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.38e4
  • 1.38e4
  • 1.74e4
66.61
  • 66.61
  • 58.09
AEIR
  • AEIR
  • AEIR
UBERON:0006241future spinal cord
  • MmusDv:0000026Theiler stage 19 (mouse)
1.43e4
  • 1.43e4
65.38
  • 65.38
AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:0000026Theiler stage 19 (mouse)
1.50e4
  • 1.50e4
63.88
  • 63.88
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
62.65
  • 62.65
AEIR
  • AEIR
UBERON:0001894diencephalon
  • MmusDv:0000026Theiler stage 19 (mouse)
1.55e4
  • 1.55e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.55e4
  • 1.55e4
  • 1.91e4
62.49
  • 62.49
  • 53.91
AEIR
  • AEIR
  • AEIR
UBERON:0001459skin of external ear
  • MmusDv:0000061early adult stage
1.59e4
  • 1.59e4
61.70
  • 61.70
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.61e4
  • 1.61e4
  • 1.80e4
61.03
  • 61.03
  • 56.54
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
1.73e4
  • 1.73e4
  • 1.83e4
  • 1.91e4
  • 1.92e4
  • 2.00e4
58.30
  • 58.30
  • 55.71
  • 53.86
  • 53.56
  • 51.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.74e4
  • 1.74e4
  • 2.09e4
  • 2.22e4
  • 2.28e4
57.92
  • 57.92
  • 49.53
  • 46.50
  • 44.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.85e4
  • 1.85e4
55.26
  • 55.26
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
  • 2.59e4
55.14
  • 55.14
  • 37.51
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0007221neonate stage
1.97e4
  • 1.97e4
  • 2.36e4
  • 2.44e4
  • 2.65e4
52.48
  • 52.48
  • 42.99
  • 41.04
  • 36.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
2.06e4
  • 2.06e4
  • 2.16e4
  • 2.34e4
50.17
  • 50.17
  • 47.89
  • 43.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002283nail matrix
  • UBERON:0007221neonate stage
2.07e4
  • 2.07e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002467filiform papilla
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0007221neonate stage
2.07e4
  • 2.07e4
  • 2.07e4
  • 2.07e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005273nail bed
  • UBERON:0007221neonate stage
2.07e4
  • 2.07e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010419vibrissa follicle
  • UBERON:0000112sexually immature stage
2.07e4
  • 2.07e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001890forebrain
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
2.11e4
  • 2.11e4
  • 2.46e4
  • 2.46e4
49.09
  • 49.09
  • 40.70
  • 40.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.12e4
  • 2.12e4
  • 2.24e4
  • 2.31e4
  • 2.43e4
  • 2.75e4
48.93
  • 48.93
  • 45.92
  • 44.25
  • 41.43
  • 33.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
2.18e4
  • 2.18e4
  • 2.34e4
  • 2.55e4
  • 2.85e4
47.28
  • 47.28
  • 43.43
  • 38.41
  • 31.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.21e4
  • 2.21e4
  • 2.32e4
  • 2.43e4
  • 2.48e4
  • 2.54e4
46.64
  • 46.64
  • 43.95
  • 41.44
  • 40.13
  • 38.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
2.22e4
  • 2.22e4
  • 2.24e4
  • 2.35e4
  • 2.35e4
  • 2.39e4
  • 2.40e4
  • 2.50e4
  • 2.55e4
  • 2.85e4
46.34
  • 46.34
  • 45.89
  • 43.36
  • 43.21
  • 42.41
  • 42.15
  • 39.75
  • 38.46
  • 31.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.26e4
  • 2.26e4
  • 2.33e4
  • 2.52e4
  • 2.64e4
45.32
  • 45.32
  • 43.75
  • 39.14
  • 36.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.28e4
  • 2.28e4
44.95
  • 44.95
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
2.31e4
  • 2.31e4
  • 2.39e4
  • 2.47e4
44.22
  • 44.22
  • 42.28
  • 40.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.51e4
  • 2.51e4
  • 2.79e4
39.30
  • 39.30
  • 32.74
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.55e4
  • 2.55e4
38.44
  • 38.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.56e4
  • 2.56e4
38.08
  • 38.08
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
2.75e4
  • 2.75e4
33.55
  • 33.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS25102 (CCDS25102.1)
EMBLAL591131, BC108981, CH466556, X81593
EnsemblENSMUSG00000002057 (Foxn1)
MGIMGI:102949 (Foxn1)
Uniprot/SPTREMBLQ5SYK1, Q5SYK1_MOUSE
Uniprot/SWISSPROTFOXN1_MOUSE, Q61575

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