M. musculus Gene: Rfx6 - ENSMUSG00000019900 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000019900
NameRfx6
Descriptionregulatory factor X, 6 [Source:MGI Symbol;Acc:MGI:2445208]
OrganismMus musculus (mouse)
Synonym(s)4930572o07rik, q8cdn5, rfxdc1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000925endoderm
  • MmusDv:0000021Theiler stage 14 (mouse)
6.90e3
  • 6.90e3
83.33455
  • 83.33455
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
9.56e3
  • 9.56e3
  • 1.31e4
76.92103
  • 76.92103
  • 68.41050
AEIR
  • AEIR
  • AEIR
UBERON:0009749limb mesenchyme
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.18e4
  • 1.18e4
  • 1.32e4
  • 1.48e4
71.42615
  • 71.42615
  • 68.17578
  • 64.28209
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000024Theiler stage 17 (mouse)
1.18e4
  • 1.18e4
71.42132
  • 71.42132
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.20e4
  • 1.20e4
  • 2.06e4
70.93996
  • 70.93996
  • 50.30389
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
1.21e4
  • 1.21e4
70.78513
  • 70.78513
AEIR
  • AEIR
UBERON:0005870olfactory pit
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.24e4
  • 1.24e4
  • 1.55e4
69.99517
  • 69.99517
  • 62.49879
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 3.30e4
68.74638
  • 68.74638
  • 20.37378
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • MmusDv:0000024Theiler stage 17 (mouse)
1.33e4
  • 1.33e4
67.84870
  • 67.84870
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
67.26704
  • 67.26704
AEIR
  • AEIR
UBERON:0001846internal ear
  • MmusDv:0000026Theiler stage 19 (mouse)
1.38e4
  • 1.38e4
66.66183
  • 66.66183
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000026Theiler stage 19 (mouse)
1.38e4
  • 1.38e4
66.65942
  • 66.65942
AEIR
  • AEIR
UBERON:0001264pancreas
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.75e4
  • 2.00e4
  • 2.07e4
64.26398
  • 64.26398
  • 57.72436
  • 51.79944
  • 49.98793
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
1.51e4
  • 1.51e4
63.54609
  • 63.54609
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
63.07810
  • 63.07810
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.55e4
  • 1.55e4
62.57873
  • 62.57873
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
62.55461
  • 62.55461
AEIR
  • AEIR
UBERON:0005598trunk somite
  • MmusDv:0000026Theiler stage 19 (mouse)
1.55e4
  • 1.55e4
62.49517
  • 62.49517
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
61.47813
  • 61.47813
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.65e4
  • 1.65e4
60.16678
  • 60.16678
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
1.91e4
  • 1.91e4
53.88218
  • 53.88218
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
53.66490
  • 53.66490
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
1.93e4
  • 1.93e4
  • 1.99e4
  • 2.55e4
53.31077
  • 53.31077
  • 51.92661
  • 38.52014
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.96e4
  • 1.96e4
52.79488
  • 52.79488
AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000113post-juvenile adult stage
1.96e4
  • 1.96e4
52.77224
  • 52.77224
AEIR
  • AEIR
UBERON:0003929digestive tract epithelium
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
2.07e4
  • 2.07e4
  • 2.07e4
50.00121
  • 50.00121
  • 50.00000
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
2.28e4
  • 2.28e4
44.90678
  • 44.90678
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.54e4
  • 2.54e4
38.69087
  • 38.69087
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
2.74e4
  • 2.74e4
33.80652
  • 33.80652
AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
2.97e4
  • 2.97e4
  • 3.69e4
28.29944
  • 28.29944
  • 10.87361
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
3.00e4
  • 3.00e4
  • 3.10e4
  • 3.22e4
27.64884
  • 27.64884
  • 25.25973
  • 22.30567
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Cross-references

CCDSCCDS23835 (CCDS23835.1), CCDS48558 (CCDS48558.1)
EMBLAC153527, AK029809, AK049380, BC132104, BC132294
EnsemblENSMUSG00000019900 (Rfx6)
MGIMGI:2445208 (Rfx6)
Uniprot/SWISSPROTQ8C7R7, RFX6_MOUSE

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