M. musculus Gene: Htr1a - ENSMUSG00000021721 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000021721
NameHtr1a
Description5-hydroxytryptamine (serotonin) receptor 1A [Source:MGI Symbol;Acc:MGI:96273]
OrganismMus musculus (mouse)
Synonym(s)5-ht1a receptor, gpcr18, q60956, q61617, q8bgs4

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003881CA1 field of hippocampus
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
3.44e3
  • 3.44e3
  • 9.17e3
  • 1.48e4
  • 2.19e4
91.68841
  • 91.68841
  • 77.87228
  • 64.35480
  • 47.03972
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
4.36e3
  • 4.36e3
  • 1.47e4
  • 1.68e4
  • 1.82e4
  • 1.84e4
89.47356
  • 89.47356
  • 64.56101
  • 59.47086
  • 56.02801
  • 55.67081
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0007221neonate stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
5.40e3
  • 5.40e3
  • 1.13e4
  • 1.50e4
  • 1.52e4
  • 1.56e4
  • 1.68e4
  • 1.69e4
  • 1.70e4
  • 1.70e4
  • 1.77e4
  • 1.80e4
  • 2.00e4
  • 2.31e4
86.95420
  • 86.95420
  • 72.60804
  • 63.66927
  • 63.27972
  • 62.35690
  • 59.45575
  • 59.23344
  • 59.07315
  • 59.07211
  • 57.35652
  • 56.43155
  • 51.60133
  • 44.12269
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000776 month-old stage (mouse)
5.75e3
  • 5.75e3
  • 1.46e4
  • 1.56e4
86.10983
  • 86.10983
  • 64.84312
  • 62.42636
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
6.59e3
  • 6.59e3
  • 1.21e4
  • 1.35e4
  • 1.40e4
  • 1.61e4
  • 1.71e4
  • 1.99e4
  • 2.05e4
84.08795
  • 84.08795
  • 70.72202
  • 67.43213
  • 66.12129
  • 61.25051
  • 58.80905
  • 52.03479
  • 50.45944
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0000112sexually immature stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
6.91e3
  • 6.91e3
  • 1.30e4
  • 1.63e4
  • 2.03e4
83.32972
  • 83.32972
  • 68.49708
  • 60.65526
  • 50.95577
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000112sexually immature stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000622 month-old stage (mouse)
7.25e3
  • 7.25e3
  • 1.51e4
  • 1.76e4
  • 1.87e4
  • 2.07e4
  • 2.58e4
82.49691
  • 82.49691
  • 63.63653
  • 57.51956
  • 54.88841
  • 49.99276
  • 37.60427
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
7.28e3
  • 7.28e3
82.42460
  • 82.42460
AEIR
  • AEIR
UBERON:0002667lateral septal nucleus
  • MmusDv:0000061early adult stage
8.08e3
  • 8.08e3
80.48390
  • 80.48390
AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0000112sexually immature stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
8.29e3
  • 8.29e3
  • 1.43e4
  • 1.69e4
  • 2.54e4
79.99759
  • 79.99759
  • 65.37617
  • 59.14191
  • 38.64906
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000112sexually immature stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000495 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
8.53e3
  • 8.53e3
  • 1.56e4
  • 1.72e4
  • 1.81e4
  • 1.84e4
  • 1.89e4
  • 1.90e4
  • 2.25e4
79.40572
  • 79.40572
  • 62.33467
  • 58.45869
  • 56.31038
  • 55.47320
  • 54.47552
  • 54.15435
  • 45.75809
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000506 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000112sexually immature stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000484 weeks (mouse)
9.09e3
  • 9.09e3
  • 9.66e3
  • 9.95e3
  • 1.01e4
  • 1.03e4
  • 1.04e4
  • 1.07e4
  • 1.19e4
  • 1.29e4
  • 1.39e4
  • 1.47e4
  • 1.56e4
  • 1.70e4
  • 1.72e4
  • 2.09e4
78.05920
  • 78.05920
  • 76.67240
  • 75.97962
  • 75.52878
  • 75.14058
  • 74.94411
  • 74.13940
  • 71.32668
  • 68.84322
  • 66.34355
  • 64.41714
  • 62.37641
  • 59.06941
  • 58.48822
  • 49.51504
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
74.99276
  • 74.99276
AEIR
  • AEIR
UBERON:0007716lumbar subsegment of spinal cord
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000473 weeks (mouse)
1.05e4
  • 1.05e4
  • 1.56e4
74.61661
  • 74.61661
  • 62.27190
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
74.21818
  • 74.21818
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000112sexually immature stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000451 week (mouse)
1.08e4
  • 1.08e4
  • 1.11e4
  • 1.14e4
  • 1.15e4
  • 1.22e4
  • 1.32e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.35e4
  • 1.38e4
  • 1.39e4
  • 1.48e4
  • 1.67e4
  • 1.93e4
73.91473
  • 73.91473
  • 73.13740
  • 72.41654
  • 72.12926
  • 70.57859
  • 68.07933
  • 67.92521
  • 67.77682
  • 67.70761
  • 67.49903
  • 66.63619
  • 66.51379
  • 64.35886
  • 59.62919
  • 53.30196
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
1.08e4
  • 1.08e4
  • 1.23e4
73.83860
  • 73.83860
  • 70.22253
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000451 week (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000026Theiler stage 19 (mouse)
1.09e4
  • 1.09e4
  • 1.21e4
  • 1.22e4
  • 1.30e4
  • 1.31e4
  • 1.43e4
  • 1.50e4
73.76837
  • 73.76837
  • 70.87204
  • 70.47291
  • 68.64442
  • 68.26618
  • 65.49087
  • 63.87562
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.09e4
  • 1.09e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
  • 1.15e4
  • 1.16e4
  • 1.23e4
  • 1.28e4
  • 1.43e4
  • 1.47e4
73.73617
  • 73.73617
  • 72.93776
  • 72.91958
  • 72.41726
  • 72.14278
  • 72.04664
  • 70.33216
  • 69.18337
  • 65.52936
  • 64.46613
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000528 weeks (mouse)
1.10e4
  • 1.10e4
  • 1.21e4
  • 1.59e4
  • 1.62e4
  • 1.63e4
  • 1.64e4
  • 1.64e4
  • 1.65e4
  • 1.67e4
  • 1.67e4
  • 1.67e4
73.33293
  • 73.33293
  • 70.83416
  • 61.52397
  • 60.96106
  • 60.57866
  • 60.36603
  • 60.33706
  • 60.13015
  • 59.77962
  • 59.71589
  • 59.69541
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.13e4
  • 1.13e4
72.77117
  • 72.77117
AEIR
  • AEIR
UBERON:0002191subiculum
  • MmusDv:0000061early adult stage
1.18e4
  • 1.18e4
71.57385
  • 71.57385
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000068embryo stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000029Theiler stage 22 (mouse)
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.30e4
  • 1.34e4
  • 1.36e4
  • 1.40e4
  • 1.41e4
  • 1.42e4
  • 1.42e4
  • 1.43e4
  • 1.49e4
  • 1.50e4
  • 1.52e4
  • 1.52e4
  • 1.59e4
  • 1.60e4
  • 1.83e4
  • 1.84e4
  • 1.86e4
  • 1.93e4
  • 1.95e4
  • 2.03e4
  • 2.49e4
71.48281
  • 71.48281
  • 70.26164
  • 68.72675
  • 67.65770
  • 67.20183
  • 66.20024
  • 65.84655
  • 65.72774
  • 65.62743
  • 65.36707
  • 64.06845
  • 63.87974
  • 63.41424
  • 63.19580
  • 61.60558
  • 61.39112
  • 55.79539
  • 55.55818
  • 54.97962
  • 53.39179
  • 52.90237
  • 51.07873
  • 39.83448
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
1.19e4
  • 1.19e4
  • 1.52e4
  • 1.67e4
  • 1.69e4
  • 1.70e4
  • 1.76e4
  • 1.95e4
71.27117
  • 71.27117
  • 63.26072
  • 59.74399
  • 59.29976
  • 58.83901
  • 57.50662
  • 52.88819
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003040central gray substance of midbrain
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
1.30e4
  • 1.30e4
  • 1.40e4
68.73235
  • 68.73235
  • 66.15258
AEIR
  • AEIR
  • AEIR
UBERON:0001384primary motor cortex
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
1.35e4
  • 1.35e4
  • 1.65e4
67.47861
  • 67.47861
  • 60.16130
AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
1.36e4
  • 1.36e4
  • 1.69e4
67.12745
  • 67.12745
  • 59.24223
AEIR
  • AEIR
  • AEIR
UBERON:0001885dentate gyrus of hippocampal formation
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
  • 1.63e4
  • 2.01e4
66.98032
  • 66.98032
  • 60.55418
  • 51.55558
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.37e4
  • 1.37e4
  • 1.46e4
66.94727
  • 66.94727
  • 64.72076
AEIR
  • AEIR
  • AEIR
UBERON:0002691ventral tegmental area
  • MmusDv:0000061early adult stage
1.38e4
  • 1.38e4
66.75063
  • 66.75063
AEIR
  • AEIR
UBERON:0001946inferior colliculus
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
1.38e4
  • 1.38e4
  • 1.58e4
66.60423
  • 66.60423
  • 61.79495
AEIR
  • AEIR
  • AEIR
UBERON:0013531retrosplenial region
  • MmusDv:0000061early adult stage
1.38e4
  • 1.38e4
66.58477
  • 66.58477
AEIR
  • AEIR
UBERON:0001935ventromedial nucleus of hypothalamus
  • MmusDv:0000061early adult stage
1.39e4
  • 1.39e4
66.51166
  • 66.51166
AEIR
  • AEIR
UBERON:0002143dorsal tegmental nucleus
  • MmusDv:0000061early adult stage
1.39e4
  • 1.39e4
66.49710
  • 66.49710
AEIR
  • AEIR
UBERON:0008947respiratory primordium
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
1.40e4
  • 1.40e4
  • 1.41e4
  • 1.41e4
66.08537
  • 66.08537
  • 66.08030
  • 66.03262
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004725piriform cortex
  • MmusDv:0000061early adult stage
1.41e4
  • 1.41e4
66.07202
  • 66.07202
AEIR
  • AEIR
UBERON:0002430lateral hypothalamic area
  • MmusDv:0000061early adult stage
1.41e4
  • 1.41e4
65.97170
  • 65.97170
AEIR
  • AEIR
UBERON:0001882nucleus accumbens
  • MmusDv:00000622 month-old stage (mouse)
1.41e4
  • 1.41e4
65.95065
  • 65.95065
AEIR
  • AEIR
UBERON:0000358blastocyst
  • UBERON:0000108blastula stage
  • MmusDv:0000008Theiler stage 04 (mouse)
1.41e4
  • 1.41e4
  • 1.76e4
65.84732
  • 65.84732
  • 57.60345
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
65.75594
  • 65.75594
AEIR
  • AEIR
UBERON:0007626subparaventricular zone
  • MmusDv:0000061early adult stage
1.42e4
  • 1.42e4
65.67035
  • 65.67035
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
65.65010
  • 65.65010
AEIR
  • AEIR
UBERON:0006241future spinal cord
  • MmusDv:0000026Theiler stage 19 (mouse)
1.43e4
  • 1.43e4
65.37617
  • 65.37617
AEIR
  • AEIR
UBERON:0002257ventral horn of spinal cord
  • UBERON:0000104life cycle
  • MmusDv:00001134-7 days (mouse)
1.44e4
  • 1.44e4
  • 1.76e4
65.33863
  • 65.33863
  • 57.49488
AEIR
  • AEIR
  • AEIR
UBERON:0002890anterior amygdaloid area
  • MmusDv:0000061early adult stage
1.44e4
  • 1.44e4
65.30946
  • 65.30946
AEIR
  • AEIR
UBERON:0001934dorsomedial nucleus of hypothalamus
  • MmusDv:0000061early adult stage
1.46e4
  • 1.46e4
64.79334
  • 64.79334
AEIR
  • AEIR
UBERON:0001930paraventricular nucleus of hypothalamus
  • MmusDv:0000061early adult stage
1.46e4
  • 1.46e4
64.78153
  • 64.78153
AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • MmusDv:00000506 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000097late adult stage
1.47e4
  • 1.47e4
  • 2.26e4
  • 2.31e4
  • 2.47e4
64.55147
  • 64.55147
  • 45.38525
  • 44.32506
  • 40.30705
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001932arcuate nucleus of hypothalamus
  • MmusDv:0000061early adult stage
1.47e4
  • 1.47e4
64.54433
  • 64.54433
AEIR
  • AEIR
UBERON:0007769medial preoptic region
  • MmusDv:0000061early adult stage
1.48e4
  • 1.48e4
64.31907
  • 64.31907
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • MmusDv:0000005Theiler stage 02 (mouse)
  • MmusDv:0000006Theiler stage 03 (mouse)
1.48e4
  • 1.48e4
  • 1.59e4
64.30352
  • 64.30352
  • 61.66555
AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000061early adult stage
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.50e4
64.28262
  • 64.28262
  • 64.22301
  • 63.89416
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001875globus pallidus
  • MmusDv:0000061early adult stage
1.48e4
  • 1.48e4
64.25181
  • 64.25181
AEIR
  • AEIR
UBERON:0002197median eminence of neurohypophysis
  • MmusDv:0000061early adult stage
1.48e4
  • 1.48e4
64.20116
  • 64.20116
AEIR
  • AEIR
UBERON:0001722medial vestibular nucleus
  • MmusDv:0000061early adult stage
1.49e4
  • 1.49e4
63.97661
  • 63.97661
AEIR
  • AEIR
UBERON:0000411visual cortex
  • MmusDv:00000451 week (mouse)
1.50e4
  • 1.50e4
63.85046
  • 63.85046
AEIR
  • AEIR
UBERON:0001929supraoptic nucleus
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
  • 2.38e4
63.77808
  • 63.77808
  • 42.43566
AEIR
  • AEIR
  • AEIR
UBERON:0001880bed nucleus of stria terminalis
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
1.53e4
  • 1.53e4
  • 1.65e4
62.96690
  • 62.96690
  • 60.07004
AEIR
  • AEIR
  • AEIR
UBERON:0001690ear
  • MmusDv:0000021Theiler stage 14 (mouse)
  • UBERON:0000111organogenesis stage
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
  • 1.56e4
  • 1.60e4
62.81777
  • 62.81777
  • 62.38078
  • 61.28472
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000021Theiler stage 14 (mouse)
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000008Theiler stage 04 (mouse)
  • MmusDv:0000006Theiler stage 03 (mouse)
  • MmusDv:0000005Theiler stage 02 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.54e4
  • 1.54e4
  • 1.79e4
  • 1.98e4
  • 2.02e4
  • 2.02e4
  • 2.03e4
  • 2.05e4
  • 2.13e4
  • 2.14e4
  • 2.22e4
  • 2.51e4
62.80140
  • 62.80140
  • 56.79273
  • 52.26142
  • 51.29901
  • 51.28023
  • 50.98713
  • 50.50647
  • 48.60249
  • 48.22603
  • 46.33317
  • 39.29783
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
  • 1.80e4
62.48793
  • 62.48793
  • 56.50000
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000026Theiler stage 19 (mouse)
1.55e4
  • 1.55e4
62.48793
  • 62.48793
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.58e4
  • 1.58e4
  • 1.99e4
  • 2.00e4
  • 2.51e4
  • 3.18e4
61.89319
  • 61.89319
  • 52.05855
  • 51.65466
  • 39.31318
  • 23.20340
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007021sexually immature organism
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
1.58e4
  • 1.58e4
  • 1.82e4
61.80570
  • 61.80570
  • 56.14655
AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.60e4
  • 1.60e4
  • 1.96e4
61.38783
  • 61.38783
  • 52.78653
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.66e4
  • 1.66e4
  • 1.78e4
  • 2.03e4
  • 2.13e4
  • 2.26e4
  • 2.32e4
  • 2.41e4
  • 2.45e4
  • 2.45e4
  • 2.47e4
  • 2.64e4
59.93930
  • 59.93930
  • 57.07632
  • 51.11161
  • 48.51630
  • 45.53542
  • 44.05017
  • 41.87528
  • 40.89995
  • 40.81132
  • 40.41089
  • 36.36301
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
1.66e4
  • 1.66e4
  • 1.67e4
  • 1.68e4
59.89940
  • 59.89940
  • 59.70693
  • 59.52376
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
1.69e4
  • 1.69e4
59.15794
  • 59.15794
AEIR
  • AEIR
UBERON:0005147metanephric renal vesicle
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.71e4
  • 1.71e4
  • 1.86e4
58.70483
  • 58.70483
  • 55.15181
AEIR
  • AEIR
  • AEIR
UBERON:0004737metanephric collecting duct
  • MmusDv:0000029Theiler stage 22 (mouse)
1.73e4
  • 1.73e4
58.33501
  • 58.33501
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • MmusDv:00000528 weeks (mouse)
1.73e4
  • 1.73e4
58.17702
  • 58.17702
AEIR
  • AEIR
UBERON:0005130metanephric loop of Henle
  • MmusDv:0000032Theiler stage 23 (mouse)
1.74e4
  • 1.74e4
57.89087
  • 57.89087
AEIR
  • AEIR
UBERON:0002034suprachiasmatic nucleus
  • MmusDv:0000061early adult stage
1.79e4
  • 1.79e4
56.88646
  • 56.88646
AEIR
  • AEIR
UBERON:0000365urothelium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.80e4
  • 1.80e4
56.61045
  • 56.61045
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
1.80e4
  • 1.80e4
  • 1.93e4
  • 2.51e4
  • 2.75e4
56.46692
  • 56.46692
  • 53.42499
  • 39.33573
  • 33.71079
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
1.82e4
  • 1.82e4
  • 1.89e4
  • 2.03e4
  • 2.55e4
56.16115
  • 56.16115
  • 54.33474
  • 51.03885
  • 38.54611
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005211renal medulla interstitium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.84e4
  • 1.84e4
55.63626
  • 55.63626
AEIR
  • AEIR
UBERON:0000079male reproductive system
  • MmusDv:0000029Theiler stage 22 (mouse)
1.86e4
  • 1.86e4
55.09358
  • 55.09358
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • MmusDv:0000075middle aged stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000506 weeks (mouse)
1.88e4
  • 1.88e4
  • 2.46e4
  • 2.50e4
54.64363
  • 54.64363
  • 40.72670
  • 39.71041
AEIR
  • AEIR
  • AEIR
  • AEIR
MA:0000187neocortex region (mouse)
  • UBERON:0000104life cycle
1.88e4
  • 1.88e4
54.55789
  • 54.55789
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
1.91e4
  • 1.91e4
  • 1.92e4
  • 2.17e4
54.00116
  • 54.00116
  • 53.66352
  • 47.53028
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.92e4
  • 1.92e4
  • 1.97e4
  • 2.25e4
  • 2.58e4
53.63612
  • 53.63612
  • 52.42055
  • 45.73897
  • 37.68148
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.92e4
  • 1.92e4
53.56714
  • 53.56714
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
1.94e4
  • 1.94e4
  • 2.14e4
  • 2.31e4
53.19877
  • 53.19877
  • 48.44783
  • 44.26997
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001846internal ear
  • MmusDv:0000021Theiler stage 14 (mouse)
1.95e4
  • 1.95e4
52.82199
  • 52.82199
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0007221neonate stage
  • UBERON:0000113post-juvenile adult stage
1.99e4
  • 1.99e4
  • 2.67e4
52.04392
  • 52.04392
  • 35.49293
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
2.01e4
  • 2.01e4
  • 2.19e4
  • 2.43e4
  • 2.60e4
  • 3.04e4
51.51538
  • 51.51538
  • 47.03177
  • 41.27979
  • 37.15147
  • 26.54184
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000081metanephros
  • UBERON:0000104life cycle
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
2.01e4
  • 2.01e4
  • 2.03e4
  • 2.13e4
  • 2.38e4
51.50806
  • 51.50806
  • 51.08706
  • 48.59107
  • 42.57332
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
2.06e4
  • 2.06e4
  • 2.28e4
  • 2.47e4
  • 2.50e4
50.31545
  • 50.31545
  • 44.88508
  • 40.28032
  • 39.59232
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
2.07e4
  • 2.07e4
  • 2.15e4
  • 2.46e4
50.06980
  • 50.06980
  • 48.09614
  • 40.63428
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.09e4
  • 2.09e4
  • 2.13e4
  • 2.39e4
  • 2.57e4
  • 3.64e4
49.57141
  • 49.57141
  • 48.56408
  • 42.28588
  • 37.85374
  • 12.03230
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0007221neonate stage
2.18e4
  • 2.18e4
  • 2.28e4
47.39708
  • 47.39708
  • 44.89452
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000539 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
2.24e4
  • 2.24e4
  • 2.34e4
  • 2.46e4
  • 2.48e4
  • 2.51e4
  • 2.55e4
  • 2.56e4
  • 2.56e4
  • 2.58e4
46.01053
  • 46.01053
  • 43.60386
  • 40.58291
  • 40.20374
  • 39.28481
  • 38.35913
  • 38.16535
  • 38.11726
  • 37.76004
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000056ureter
  • MmusDv:0000032Theiler stage 23 (mouse)
2.24e4
  • 2.24e4
45.80316
  • 45.80316
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.31e4
  • 2.31e4
44.29532
  • 44.29532
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
2.42e4
  • 2.42e4
  • 2.45e4
  • 2.58e4
  • 2.84e4
  • 3.21e4
41.67325
  • 41.67325
  • 40.88959
  • 37.64319
  • 31.35331
  • 22.49360
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
2.49e4
  • 2.49e4
  • 2.55e4
39.78892
  • 39.78892
  • 38.51427
AEIR
  • AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
2.55e4
  • 2.55e4
38.45946
  • 38.45946
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
2.56e4
  • 2.56e4
38.29162
  • 38.29162
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.63e4
  • 2.63e4
36.49592
  • 36.49592
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.08e4
  • 3.08e4
25.64626
  • 25.64626
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS26756 (CCDS26756.1)
EMBLAK043668, AK049814, AK049884, AK140194, BC138669, BC138681, CH466568, L20339, U33820, U39391
EnsemblENSMUSG00000021721 (Htr1a)
MGIMGI:96273 (Htr1a)
Uniprot/SWISSPROT5HT1A_MOUSE, Q64264

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