M. musculus Gene: Htr6 - ENSMUSG00000028747 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000028747
NameHtr6
Description5-hydroxytryptamine (serotonin) receptor 6 [Source:MGI Symbol;Acc:MGI:1196627]
OrganismMus musculus (mouse)
Synonym(s)5-ht6

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004040cortical intermediate zone
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
  • 1.18e4
  • 1.38e4
  • 1.99e4
75.00
  • 75.00
  • 71.43
  • 66.66
  • 52.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.18e4
  • 1.18e4
  • 1.29e4
  • 1.38e4
  • 1.45e4
71.43
  • 71.43
  • 68.87
  • 66.66
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
70.13
  • 70.13
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
1.28e4
  • 1.28e4
69.17
  • 69.17
AEIR
  • AEIR
UBERON:0014940cerebral cortex subventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
1.29e4
  • 1.29e4
  • 1.29e4
  • 1.55e4
  • 1.66e4
68.75
  • 68.75
  • 68.75
  • 62.50
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.30e4
  • 1.30e4
68.72
  • 68.72
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
  • 1.74e4
  • 2.16e4
  • 2.36e4
  • 2.42e4
  • 2.49e4
  • 2.50e4
  • 2.52e4
  • 2.54e4
  • 2.55e4
  • 2.55e4
66.59
  • 66.59
  • 57.89
  • 47.93
  • 42.91
  • 41.65
  • 39.83
  • 39.75
  • 39.09
  • 38.66
  • 38.48
  • 38.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.46e4
  • 1.46e4
  • 2.22e4
  • 2.26e4
  • 2.34e4
  • 2.38e4
  • 2.47e4
  • 2.49e4
  • 2.73e4
  • 2.76e4
  • 2.89e4
64.79
  • 64.79
  • 46.47
  • 45.32
  • 43.45
  • 42.65
  • 40.34
  • 39.88
  • 34.13
  • 33.31
  • 30.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
1.50e4
  • 1.50e4
63.84
  • 63.84
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.64e4
  • 1.64e4
60.41
  • 60.41
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
59.46
  • 59.46
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
  • 1.80e4
  • 1.84e4
  • 2.31e4
  • 2.41e4
  • 2.52e4
  • 2.53e4
58.10
  • 58.10
  • 56.52
  • 55.49
  • 44.25
  • 41.80
  • 39.20
  • 38.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000104life cycle
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.77e4
  • 1.77e4
  • 1.93e4
  • 2.24e4
  • 2.47e4
57.38
  • 57.38
  • 53.48
  • 45.82
  • 40.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.79e4
  • 1.79e4
56.72
  • 56.72
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
1.82e4
  • 1.82e4
  • 1.97e4
  • 2.49e4
  • 2.51e4
  • 2.51e4
  • 2.54e4
56.02
  • 56.02
  • 52.37
  • 39.86
  • 39.52
  • 39.51
  • 38.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
1.83e4
  • 1.83e4
  • 2.09e4
  • 2.67e4
  • 2.68e4
55.90
  • 55.90
  • 49.56
  • 35.63
  • 35.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001103diaphragm
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
1.85e4
  • 1.85e4
  • 2.50e4
55.28
  • 55.28
  • 39.71
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
  • 2.48e4
54.43
  • 54.43
  • 40.03
AEIR
  • AEIR
  • AEIR
UBERON:0000358blastocyst
  • UBERON:0000108blastula stage
1.90e4
  • 1.90e4
54.22
  • 54.22
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.91e4
  • 1.91e4
53.88
  • 53.88
AEIR
  • AEIR
UBERON:0000079male reproductive system
  • MmusDv:0000029Theiler stage 22 (mouse)
1.97e4
  • 1.97e4
52.37
  • 52.37
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
2.00e4
  • 2.00e4
  • 2.50e4
  • 2.82e4
51.78
  • 51.78
  • 39.65
  • 31.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.00e4
  • 2.00e4
51.75
  • 51.75
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.01e4
  • 2.01e4
  • 2.03e4
  • 2.07e4
51.41
  • 51.41
  • 51.02
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
2.03e4
  • 2.03e4
51.08
  • 51.08
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
2.06e4
  • 2.06e4
  • 2.28e4
  • 2.55e4
50.15
  • 50.15
  • 45.05
  • 38.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
2.11e4
  • 2.11e4
49.17
  • 49.17
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
2.12e4
  • 2.12e4
48.79
  • 48.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
2.14e4
  • 2.14e4
  • 2.71e4
48.45
  • 48.45
  • 34.54
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.14e4
  • 2.14e4
  • 2.51e4
  • 3.13e4
48.31
  • 48.31
  • 39.47
  • 24.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
2.18e4
  • 2.18e4
  • 2.65e4
  • 2.80e4
47.35
  • 47.35
  • 36.09
  • 32.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.28e4
  • 2.28e4
44.86
  • 44.86
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.34e4
  • 2.34e4
  • 2.46e4
43.56
  • 43.56
  • 40.51
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.34e4
  • 2.34e4
43.43
  • 43.43
AEIR
  • AEIR
UBERON:0002108small intestine
  • MmusDv:0000061early adult stage
2.38e4
  • 2.38e4
42.53
  • 42.53
AEIR
  • AEIR
UBERON:0002308nucleus of brain
  • MmusDv:0000061early adult stage
2.43e4
  • 2.43e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
2.44e4
  • 2.44e4
41.13
  • 41.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.45e4
  • 2.45e4
  • 2.57e4
  • 2.57e4
  • 2.58e4
  • 3.08e4
40.75
  • 40.75
  • 37.88
  • 37.88
  • 37.64
  • 25.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0000104life cycle
2.46e4
  • 2.46e4
40.73
  • 40.73
AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.49e4
  • 2.49e4
  • 2.49e4
  • 2.51e4
40.00
  • 40.00
  • 39.97
  • 39.30
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.49e4
  • 2.49e4
  • 2.56e4
39.90
  • 39.90
  • 38.09
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.63e4
  • 2.63e4
36.48
  • 36.48
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
2.72e4
  • 2.72e4
34.25
  • 34.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
2.88e4
  • 2.88e4
30.43
  • 30.43
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.98e4
  • 2.98e4
28.10
  • 28.10
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
3.07e4
  • 3.07e4
25.98
  • 25.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS18838 (CCDS18838.1)
EMBLAF134158, AL805923, BC116652, BC116653, CH466615
EnsemblENSMUSG00000028747 (Htr6)
MGIMGI:1196627 (Htr6)
Uniprot/SPTREMBLQ14AW8, Q14AW8_MOUSE
Uniprot/SWISSPROT5HT6R_MOUSE, Q9R1C8

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