M. musculus Gene: Hcrtr1 - ENSMUSG00000028778 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000028778
NameHcrtr1
Descriptionhypocretin (orexin) receptor 1 [Source:MGI Symbol;Acc:MGI:2385650]
OrganismMus musculus (mouse)
Synonym(s)ox-1-r, ox1-r, ox1r, q0vdp5, q3uss9, q6vns3, q80t45

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002038substantia nigra
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000061early adult stage
8.49e3
  • 8.49e3
  • 8.89e3
  • 2.44e4
79.51
  • 79.51
  • 78.54
  • 41.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
  • 1.80e4
73.60
  • 73.60
  • 56.65
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
1.23e4
  • 1.23e4
  • 1.40e4
  • 1.46e4
  • 1.70e4
  • 1.70e4
70.26
  • 70.26
  • 66.30
  • 64.71
  • 59.05
  • 58.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000068embryo stage
1.23e4
  • 1.23e4
  • 1.48e4
  • 1.55e4
  • 1.60e4
  • 1.71e4
  • 1.71e4
  • 1.94e4
  • 2.05e4
  • 2.15e4
  • 2.47e4
  • 2.48e4
  • 2.50e4
  • 2.50e4
  • 2.53e4
  • 2.53e4
  • 2.54e4
  • 2.55e4
70.22
  • 70.22
  • 64.29
  • 62.66
  • 61.41
  • 58.77
  • 58.76
  • 53.27
  • 50.42
  • 48.16
  • 40.26
  • 40.21
  • 39.75
  • 39.54
  • 38.95
  • 38.83
  • 38.57
  • 38.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003040central gray substance of midbrain
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
1.33e4
  • 1.33e4
  • 1.53e4
67.88
  • 67.88
  • 63.09
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • MmusDv:00000622 month-old stage (mouse)
1.35e4
  • 1.35e4
67.39
  • 67.39
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.36e4
  • 1.36e4
67.20
  • 67.20
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.45e4
  • 1.45e4
65.04
  • 65.04
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.46e4
  • 1.46e4
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
64.32
  • 64.32
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0007221neonate stage
1.51e4
  • 1.51e4
  • 1.64e4
  • 1.84e4
  • 2.45e4
63.51
  • 63.51
  • 60.31
  • 55.53
  • 40.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
63.27
  • 63.27
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.72e4
  • 1.77e4
  • 2.22e4
  • 2.48e4
63.03
  • 63.03
  • 58.46
  • 57.32
  • 46.52
  • 40.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • MmusDv:00000462 weeks (mouse)
1.58e4
  • 1.58e4
61.89
  • 61.89
AEIR
  • AEIR
UBERON:0001017central nervous system
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0007221neonate stage
1.59e4
  • 1.59e4
  • 1.59e4
61.68
  • 61.68
  • 61.51
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
1.59e4
  • 1.59e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
1.63e4
  • 1.63e4
  • 2.31e4
  • 2.50e4
  • 3.13e4
60.67
  • 60.67
  • 44.20
  • 39.59
  • 24.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
  • 2.11e4
59.97
  • 59.97
  • 48.98
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000776 month-old stage (mouse)
1.66e4
  • 1.66e4
  • 1.72e4
59.95
  • 59.95
  • 58.57
AEIR
  • AEIR
  • AEIR
UBERON:0002143dorsal tegmental nucleus
  • MmusDv:0000061early adult stage
1.66e4
  • 1.66e4
59.94
  • 59.94
AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0007221neonate stage
1.69e4
  • 1.69e4
  • 2.25e4
  • 2.52e4
  • 2.53e4
59.15
  • 59.15
  • 45.73
  • 39.22
  • 38.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.73e4
  • 1.73e4
  • 2.51e4
  • 2.63e4
  • 2.66e4
58.20
  • 58.20
  • 39.34
  • 36.58
  • 35.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.74e4
  • 1.74e4
58.11
  • 58.11
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0000104life cycle
1.78e4
  • 1.78e4
56.98
  • 56.98
AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:00000622 month-old stage (mouse)
1.81e4
  • 1.81e4
56.19
  • 56.19
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.83e4
  • 1.83e4
  • 1.83e4
  • 2.41e4
55.88
  • 55.88
  • 55.80
  • 41.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.84e4
  • 1.84e4
55.48
  • 55.48
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0000966retina
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000495 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
1.86e4
  • 1.86e4
  • 2.39e4
  • 2.49e4
  • 2.52e4
  • 2.56e4
  • 2.59e4
55.05
  • 55.05
  • 42.34
  • 39.84
  • 39.12
  • 38.19
  • 37.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
  • 2.02e4
  • 2.04e4
  • 2.32e4
  • 2.44e4
  • 2.53e4
  • 2.54e4
  • 2.56e4
54.45
  • 54.45
  • 51.21
  • 50.78
  • 43.98
  • 41.16
  • 38.97
  • 38.76
  • 38.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002257ventral horn of spinal cord
  • UBERON:0000104life cycle
  • MmusDv:00001134-7 days (mouse)
1.89e4
  • 1.89e4
  • 2.22e4
54.28
  • 54.28
  • 46.35
AEIR
  • AEIR
  • AEIR
UBERON:0007021sexually immature organism
  • UBERON:0000104life cycle
1.90e4
  • 1.90e4
54.22
  • 54.22
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
  • 2.08e4
  • 2.23e4
  • 2.54e4
  • 2.73e4
53.70
  • 53.70
  • 49.74
  • 46.15
  • 38.70
  • 34.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000104life cycle
1.97e4
  • 1.97e4
  • 2.20e4
  • 2.24e4
  • 2.37e4
52.37
  • 52.37
  • 46.87
  • 45.93
  • 42.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
1.98e4
  • 1.98e4
  • 2.50e4
  • 2.50e4
  • 2.51e4
  • 2.51e4
  • 2.54e4
52.14
  • 52.14
  • 39.64
  • 39.57
  • 39.52
  • 39.51
  • 38.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
1.99e4
  • 1.99e4
  • 2.50e4
51.92
  • 51.92
  • 39.59
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00001134-7 days (mouse)
2.01e4
  • 2.01e4
  • 2.55e4
51.59
  • 51.59
  • 38.56
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000113post-juvenile adult stage
2.01e4
  • 2.01e4
51.53
  • 51.53
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.02e4
  • 2.02e4
  • 2.49e4
51.13
  • 51.13
  • 39.90
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0007221neonate stage
2.09e4
  • 2.09e4
  • 2.19e4
  • 2.51e4
  • 2.56e4
49.54
  • 49.54
  • 47.04
  • 39.36
  • 38.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.12e4
  • 2.12e4
48.91
  • 48.91
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.19e4
  • 2.19e4
47.12
  • 47.12
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
2.21e4
  • 2.21e4
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0005151metanephric proximal tubule
  • MmusDv:0000032Theiler stage 23 (mouse)
2.32e4
  • 2.32e4
44.09
  • 44.09
AEIR
  • AEIR
UBERON:0003307floor plate of midbrain
  • MmusDv:0000024Theiler stage 17 (mouse)
2.34e4
  • 2.34e4
43.59
  • 43.59
AEIR
  • AEIR
UBERON:0005147metanephric renal vesicle
  • MmusDv:0000027Theiler stage 20 (mouse)
2.34e4
  • 2.34e4
43.56
  • 43.56
AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.38e4
  • 2.38e4
42.50
  • 42.50
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.40e4
  • 2.40e4
  • 2.54e4
  • 3.08e4
41.97
  • 41.97
  • 38.65
  • 25.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.41e4
  • 2.41e4
  • 2.44e4
41.90
  • 41.90
  • 41.00
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.41e4
  • 2.41e4
  • 2.48e4
  • 2.55e4
  • 2.73e4
41.85
  • 41.85
  • 40.16
  • 38.45
  • 34.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.42e4
  • 2.42e4
41.59
  • 41.59
AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.47e4
  • 2.47e4
  • 2.49e4
40.38
  • 40.38
  • 39.94
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.47e4
  • 2.47e4
  • 2.49e4
40.33
  • 40.33
  • 39.92
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
2.49e4
  • 2.49e4
  • 2.51e4
  • 2.54e4
40.00
  • 40.00
  • 39.30
  • 38.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.49e4
  • 2.49e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0002108small intestine
  • MmusDv:00001134-7 days (mouse)
2.50e4
  • 2.50e4
39.63
  • 39.63
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.55e4
  • 2.55e4
  • 2.57e4
  • 2.61e4
38.36
  • 38.36
  • 37.97
  • 37.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.68e4
  • 2.68e4
  • 2.71e4
35.40
  • 35.40
  • 34.54
AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
2.70e4
  • 2.70e4
34.83
  • 34.83
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.79e4
  • 2.79e4
32.63
  • 32.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

CCDSCCDS18707 (CCDS18707.1)
EMBLAF394596, AK140137, AL606925, AY255599, AY336083, BC119583, CU207372, CU210846
EnsemblENSMUSG00000028778 (Hcrtr1)
MGIMGI:2385650 (Hcrtr1)
Uniprot/SWISSPROTOX1R_MOUSE, P58307

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