M. musculus Gene: Hdac1 - ENSMUSG00000028800 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000028800
NameHdac1
Descriptionhistone deacetylase 1 [Source:MGI Symbol;Acc:MGI:108086]
OrganismMus musculus (mouse)
Synonym(s)hd1, hdac1-ps, mommed5, p97476, rpd3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002370thymus
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
857
  • 857
  • 1.54e4
  • 1.76e4
  • 1.92e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
1.14e3
  • 1.14e3
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0007221neonate stage
1.37e3
  • 1.37e3
  • 1.53e3
  • 1.91e4
  • 1.95e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
1.52e3
  • 1.52e3
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000104life cycle
1.81e3
  • 1.81e3
  • 2.20e3
  • 1.43e4
  • 1.84e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.02e3
  • 2.02e3
AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
2.15e3
  • 2.15e3
  • 3.07e3
  • 1.54e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
2.17e3
  • 2.17e3
  • 2.26e3
  • 1.61e4
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
2.47e3
  • 2.47e3
AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
2.53e3
  • 2.53e3
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
2.87e3
  • 2.87e3
  • 3.21e3
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • UBERON:0000104life cycle
3.50e3
  • 3.50e3
  • 3.58e3
  • 1.81e4
  • 2.00e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.57e3
  • 3.57e3
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
3.95e3
  • 3.95e3
AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
4.32e3
  • 4.32e3
  • 1.80e4
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
4.36e3
  • 4.36e3
  • 4.75e3
  • 5.09e3
  • 1.57e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
4.55e3
  • 4.55e3
  • 5.35e3
  • 8.03e3
  • 1.70e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000112sexually immature stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
4.66e3
  • 4.66e3
  • 5.45e3
  • 1.77e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000034Theiler stage 25 (mouse)
5.17e3
  • 5.17e3
  • 5.88e3
  • 1.58e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0000104life cycle
5.47e3
  • 5.47e3
  • 6.06e3
  • 1.22e4
  • 1.58e4
  • 1.68e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
5.70e3
  • 5.70e3
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
6.36e3
  • 6.36e3
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
6.53e3
  • 6.53e3
  • 1.69e4
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0000112sexually immature stage
6.84e3
  • 6.84e3
AEIR
  • AEIR
UBERON:0001886choroid plexus
  • UBERON:0000112sexually immature stage
7.33e3
  • 7.33e3
AEIR
  • AEIR
UBERON:0002360meninx
  • UBERON:0000112sexually immature stage
7.46e3
  • 7.46e3
AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0000112sexually immature stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
8.21e3
  • 8.21e3
  • 1.42e4
  • 1.78e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000104life cycle
8.45e3
  • 8.45e3
  • 1.54e4
  • 1.59e4
  • 2.02e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001277intestinal epithelium
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.03e4
  • 1.03e4
  • 1.54e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000012Theiler stage 08 (mouse)
  • MmusDv:0000014Theiler stage 09 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000019Theiler stage 12 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000068embryo stage
  • MmusDv:0000008Theiler stage 04 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • UBERON:0000108blastula stage
1.03e4
  • 1.03e4
  • 1.06e4
  • 1.40e4
  • 1.48e4
  • 1.53e4
  • 1.55e4
  • 1.59e4
  • 1.60e4
  • 1.66e4
  • 1.74e4
  • 1.74e4
  • 1.78e4
  • 1.82e4
  • 2.00e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0000112sexually immature stage
1.03e4
  • 1.03e4
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000032Theiler stage 23 (mouse)
1.17e4
  • 1.17e4
AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:0000032Theiler stage 23 (mouse)
1.28e4
  • 1.28e4
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000112sexually immature stage
1.37e4
  • 1.37e4
  • 1.44e4
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.75e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000027Theiler stage 20 (mouse)
1.40e4
  • 1.40e4
AEIR
  • AEIR
UBERON:0006241future spinal cord
  • MmusDv:0000026Theiler stage 19 (mouse)
1.42e4
  • 1.42e4
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000110neurula stage
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000068embryo stage
1.43e4
  • 1.43e4
  • 1.85e4
  • 1.97e4
  • 2.05e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006377remnant of Rathke's pouch
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.46e4
  • 1.46e4
  • 1.66e4
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:0000026Theiler stage 19 (mouse)
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001894diencephalon
  • MmusDv:0000026Theiler stage 19 (mouse)
1.54e4
  • 1.54e4
AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.54e4
  • 1.54e4
  • 1.89e4
AEIR
  • AEIR
  • AEIR
EMAPA:16040compacted morula (mouse)
  • MmusDv:0000006Theiler stage 03 (mouse)
1.55e4
  • 1.55e4
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0007221neonate stage
  • UBERON:0000068embryo stage
1.58e4
  • 1.58e4
  • 1.91e4
  • 1.97e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016887entire extraembryonic component
  • UBERON:0000110neurula stage
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:00192504-8 cell stage embryo
  • MmusDv:0000006Theiler stage 03 (mouse)
1.78e4
  • 1.78e4
AEIR
  • AEIR
UBERON:0001846internal ear
  • MmusDv:0000021Theiler stage 14 (mouse)
1.82e4
  • 1.82e4
AEIR
  • AEIR
MA:0000187neocortex region (mouse)
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
AEIR
  • AEIR
UBERON:0000033head
  • MmusDv:00000451 week (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Cross-references

CCDSCCDS18696 (CCDS18696.1)
EMBLAL606921, BC092070, BC108371, U80780, X98207
EnsemblENSMUSG00000028800 (Hdac1)
MGIMGI:108086 (Hdac1)
Uniprot/SPTREMBLQ58E49, Q58E49_MOUSE
Uniprot/SWISSPROTHDAC1_MOUSE, O09106

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