M. musculusGene: Hnf1a - ENSMUSG00000029556 - Mus musculus (mouse)

Gene Information

Ensembl IDENSMUSG00000029556
NameHnf1a
DescriptionHNF1 homeobox A [Source:MGI Symbol;Acc:MGI:98504]
OrganismMus musculus (mouse)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000081metanephros
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
6.21e3
  • 6.21e3
  • 2.05e4
  • 3.28e4
  • 3.31e4
  • 3.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
7.45e3
  • 7.45e3
  • 3.47e4
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.90e3
  • 7.90e3
AEIR
  • AEIR
UBERON:0001555digestive tract
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.17e4
  • 1.17e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
1.22e4
  • 1.22e4
  • 2.96e4
  • 3.23e4
  • 3.26e4
  • 3.38e4
  • 3.42e4
  • 3.42e4
  • 3.43e4
  • 3.44e4
  • 3.46e4
  • 3.48e4
  • 3.50e4
  • 3.50e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012238ureteric bud trunk
  • MmusDv:0000032Theiler stage 23 (mouse)
1.26e4
  • 1.26e4
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.33e4
  • 1.33e4
  • 2.89e4
  • 3.45e4
  • 3.54e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
1.37e4
  • 1.37e4
  • 1.58e4
AEIR
  • AEIR
  • AEIR
UBERON:0005215kidney interstitium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0016887entire extraembryonic component
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
1.37e4
  • 1.37e4
  • 4.10e4
AEIR
  • AEIR
  • AEIR
UBERON:0005107metanephric cap
  • MmusDv:0000032Theiler stage 23 (mouse)
1.43e4
  • 1.43e4
AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000024Theiler stage 17 (mouse)
1.44e4
  • 1.44e4
AEIR
  • AEIR
EMAPA:28500early tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.45e4
  • 1.45e4
AEIR
  • AEIR
UBERON:0003307floor plate of midbrain
  • MmusDv:0000024Theiler stage 17 (mouse)
1.45e4
  • 1.45e4
AEIR
  • AEIR
UBERON:0001929supraoptic nucleus
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
AEIR
  • AEIR
EMAPA:28527late tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0003517kidney blood vessel
  • MmusDv:0000032Theiler stage 23 (mouse)
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007221neonate stage
1.73e4
  • 1.73e4
AEIR
  • AEIR
UBERON:0001844cochlea
  • MmusDv:00000539 weeks (mouse)
1.76e4
  • 1.76e4
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0007221neonate stage
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
1.80e4
  • 1.80e4
  • 2.01e4
  • 2.83e4
  • 3.37e4
  • 3.43e4
  • 3.44e4
  • 3.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.81e4
  • 1.81e4
  • 1.89e4
  • 2.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
  • 2.03e4
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • MmusDv:0000033Theiler stage 24 (mouse)
1.94e4
  • 1.94e4
AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000097late adult stage
1.96e4
  • 1.96e4
  • 3.39e4
AEIR
  • AEIR
  • AEIR
UBERON:0000358blastocyst
  • MmusDv:0000008Theiler stage 04 (mouse)
  • UBERON:0000108blastula stage
1.96e4
  • 1.96e4
  • 2.94e4
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
1.97e4
  • 1.97e4
  • 3.38e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
1.99e4
  • 1.99e4
  • 3.41e4
  • 3.45e4
  • 3.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000021Theiler stage 14 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.00e4
  • 2.00e4
  • 2.77e4
  • 2.95e4
  • 3.24e4
  • 3.45e4
  • 3.54e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
2.04e4
  • 2.04e4
  • 2.19e4
  • 3.43e4
  • 3.43e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003134female reproductive organ
  • MmusDv:0000032Theiler stage 23 (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
CL:0000711cumulus cell
  • MmusDv:0000061early adult stage
2.05e4
  • 2.05e4
AEIR
  • AEIR
UBERON:0001068skin of back
  • MmusDv:0000029Theiler stage 22 (mouse)
2.06e4
  • 2.06e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
2.16e4
  • 2.16e4
  • 2.57e4
  • 3.41e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.19e4
  • 2.19e4
  • 2.24e4
  • 2.46e4
  • 2.58e4
  • 2.73e4
  • 3.19e4
  • 3.22e4
  • 3.23e4
  • 3.25e4
  • 3.30e4
  • 3.38e4
  • 3.41e4
  • 3.54e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002038substantia nigra
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
2.19e4
  • 2.19e4
  • 2.23e4
  • 3.34e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001334female urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
2.21e4
  • 2.21e4
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
2.23e4
  • 2.23e4
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.28e4
  • 2.28e4
  • 2.91e4
AEIR
  • AEIR
  • AEIR
UBERON:0005147metanephric renal vesicle
  • MmusDv:0000027Theiler stage 20 (mouse)
2.31e4
  • 2.31e4
AEIR
  • AEIR
UBERON:0002137aortic valve
  • MmusDv:00000484 weeks (mouse)
2.32e4
  • 2.32e4
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.38e4
  • 2.38e4
  • 2.58e4
AEIR
  • AEIR
  • AEIR
UBERON:0002282stria vascularis of cochlear duct
  • MmusDv:00000451 week (mouse)
  • UBERON:0000066fully formed stage
2.45e4
  • 2.45e4
  • 3.38e4
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000061early adult stage
2.46e4
  • 2.46e4
  • 2.65e4
  • 2.79e4
  • 2.87e4
  • 3.09e4
  • 3.19e4
  • 3.19e4
  • 3.45e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001040yolk sac
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.46e4
  • 2.46e4
  • 4.10e4
AEIR
  • AEIR
  • AEIR
UBERON:0001496ascending aorta
  • MmusDv:00000484 weeks (mouse)
2.48e4
  • 2.48e4
AEIR
  • AEIR
UBERON:0006364ureteric bud tip
  • MmusDv:0000032Theiler stage 23 (mouse)
2.52e4
  • 2.52e4
AEIR
  • AEIR
UBERON:0003220metanephric mesenchyme
  • MmusDv:0000026Theiler stage 19 (mouse)
2.53e4
  • 2.53e4
AEIR
  • AEIR
UBERON:0005151metanephric proximal tubule
  • MmusDv:0000032Theiler stage 23 (mouse)
2.61e4
  • 2.61e4
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • UBERON:0007221neonate stage
2.72e4
  • 2.72e4
AEIR
  • AEIR
UBERON:0001017central nervous system
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
2.73e4
  • 2.73e4
  • 3.07e4
  • 3.57e4
  • 3.57e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
2.77e4
  • 2.77e4
  • 3.39e4
  • 3.42e4
  • 3.45e4
  • 3.46e4
  • 3.47e4
  • 3.52e4
  • 3.62e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
2.91e4
  • 2.91e4
  • 3.24e4
  • 3.39e4
  • 3.41e4
  • 3.44e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • MmusDv:0000033Theiler stage 24 (mouse)
3.07e4
  • 3.07e4
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
3.13e4
  • 3.13e4
  • 3.18e4
  • 3.40e4
  • 3.48e4
  • 3.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004134proximal tubule
  • UBERON:0000104life cycle
  • MmusDv:0000034Theiler stage 25 (mouse)
3.28e4
  • 3.28e4
  • 3.28e4
AEIR
  • AEIR
  • AEIR
UBERON:0004876urogenital fold
  • MmusDv:0000024Theiler stage 17 (mouse)
3.33e4
  • 3.33e4
AEIR
  • AEIR
UBERON:0001890forebrain
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
3.37e4
  • 3.37e4
  • 3.38e4
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0007221neonate stage
3.45e4
  • 3.45e4
  • 3.47e4
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data: