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M. musculus Gene: Cdx4 - ENSMUSG00000031326 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000031326
NameCdx4
Descriptioncaudal type homeobox 4 [Source:MGI Symbol;Acc:MGI:88362]
OrganismMus musculus (mouse)
Synonym(s)cdx-3, cdx-4, cdx3
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
348
  • 348
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000019Theiler stage 12 (mouse)
  • MmusDv:0000020Theiler stage 13 (mouse)
  • UBERON:0000110neurula stage
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000005Theiler stage 02 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.56e3
  • 2.56e3
  • 6.94e3
  • 1.53e4
  • 1.56e4
  • 2.04e4
  • 2.52e4
93.86
  • 93.86
  • 83.34
  • 63.18
  • 62.45
  • 51.03
  • 39.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000020Theiler stage 13 (mouse)
4.05e3
  • 4.05e3
  • 8.34e3
90.28
  • 90.28
  • 80.00
AEIR
  • AEIR
  • AEIR
EMAPA:28533male associated reproductive structure (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
9.26e3
  • 9.26e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0004341primitive streak
  • UBERON:0000068embryo stage
  • MmusDv:0000015Theiler stage 10 (mouse)
9.68e3
  • 9.68e3
  • 1.64e4
76.78
  • 76.78
  • 60.70
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
1.02e4
  • 1.02e4
  • 2.49e4
75.46
  • 75.46
  • 40.21
AEIR
  • AEIR
  • AEIR
UBERON:0003599tail connective tissue
  • MmusDv:0000022Theiler stage 15 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001046hindgut
  • MmusDv:0000022Theiler stage 15 (mouse)
1.19e4
  • 1.19e4
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0001333male urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
1.22e4
  • 1.22e4
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:0000032Theiler stage 23 (mouse)
1.22e4
  • 1.22e4
70.82
  • 70.82
AEIR
  • AEIR
UBERON:0004340allantois
  • MmusDv:0000015Theiler stage 10 (mouse)
1.25e4
  • 1.25e4
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0003353epithelium of hindgut
  • MmusDv:0000022Theiler stage 15 (mouse)
1.39e4
  • 1.39e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001017central nervous system
  • MmusDv:0000024Theiler stage 17 (mouse)
  • UBERON:0007221neonate stage
1.39e4
  • 1.39e4
  • 2.61e4
66.66
  • 66.66
  • 37.30
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
1.46e4
  • 1.46e4
  • 1.47e4
64.99
  • 64.99
  • 64.69
AEIR
  • AEIR
  • AEIR
UBERON:0009749limb mesenchyme
  • MmusDv:0000026Theiler stage 19 (mouse)
1.49e4
  • 1.49e4
64.28
  • 64.28
AEIR
  • AEIR
EMAPA:16253hindgut diverticulum endoderm (mouse)
  • MmusDv:0000020Theiler stage 13 (mouse)
1.56e4
  • 1.56e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
1.61e4
  • 1.61e4
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
1.71e4
  • 1.71e4
58.95
  • 58.95
AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
1.77e4
  • 1.77e4
  • 2.40e4
57.61
  • 57.61
  • 42.48
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0007221neonate stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.00e4
  • 2.00e4
  • 2.18e4
  • 2.25e4
  • 2.29e4
  • 2.40e4
  • 2.41e4
  • 2.41e4
  • 2.44e4
  • 2.49e4
  • 2.91e4
51.89
  • 51.89
  • 47.60
  • 45.89
  • 44.98
  • 42.32
  • 42.19
  • 42.07
  • 41.36
  • 40.31
  • 30.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.01e4
  • 2.01e4
  • 2.50e4
51.86
  • 51.86
  • 40.03
AEIR
  • AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
2.04e4
  • 2.04e4
51.14
  • 51.14
AEIR
  • AEIR
EMAPA:16753tail nervous system (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001890forebrain
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000033Theiler stage 24 (mouse)
2.12e4
  • 2.12e4
  • 2.98e4
  • 3.09e4
49.14
  • 49.14
  • 28.46
  • 25.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.12e4
  • 2.12e4
  • 2.51e4
  • 2.59e4
  • 2.72e4
  • 3.40e4
  • 3.70e4
49.03
  • 49.03
  • 39.68
  • 37.97
  • 34.84
  • 18.42
  • 11.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0007221neonate stage
2.13e4
  • 2.13e4
  • 2.52e4
  • 2.59e4
  • 2.62e4
48.96
  • 48.96
  • 39.48
  • 37.80
  • 37.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
  • 2.36e4
  • 2.52e4
  • 3.56e4
48.46
  • 48.46
  • 43.41
  • 39.62
  • 14.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • MmusDv:0000005Theiler stage 02 (mouse)
2.17e4
  • 2.17e4
47.94
  • 47.94
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0000104life cycle
2.17e4
  • 2.17e4
47.81
  • 47.81
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
  • 2.31e4
  • 2.33e4
  • 2.39e4
  • 2.40e4
  • 2.41e4
  • 2.56e4
  • 3.54e4
  • 3.68e4
46.64
  • 46.64
  • 44.59
  • 44.07
  • 42.65
  • 42.51
  • 42.26
  • 38.58
  • 15.04
  • 11.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000506 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.29e4
  • 2.29e4
  • 2.49e4
  • 2.52e4
  • 2.55e4
  • 2.56e4
  • 2.64e4
  • 3.29e4
45.03
  • 45.03
  • 40.26
  • 39.57
  • 38.90
  • 38.47
  • 36.75
  • 20.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.31e4
  • 2.31e4
  • 2.99e4
44.54
  • 44.54
  • 28.31
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0007221neonate stage
2.32e4
  • 2.32e4
  • 2.47e4
  • 2.59e4
44.24
  • 44.24
  • 40.68
  • 37.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • UBERON:0000110neurula stage
2.32e4
  • 2.32e4
44.21
  • 44.21
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.34e4
  • 2.34e4
43.80
  • 43.80
AEIR
  • AEIR
UBERON:0000056ureter
  • MmusDv:0000032Theiler stage 23 (mouse)
2.47e4
  • 2.47e4
40.73
  • 40.73
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.62e4
  • 2.62e4
37.05
  • 37.05
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
2.66e4
  • 2.66e4
36.08
  • 36.08
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.71e4
  • 2.71e4
  • 2.92e4
34.94
  • 34.94
  • 29.98
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.77e4
  • 2.77e4
33.51
  • 33.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota11 species12 genesCompare expression
Tetrapoda12 species13 genesCompare expression
Euteleostomi13 species14 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000031326.

Cross-references

CCDSCCDS30328 (CCDS30328.1)
EnsemblENSMUSG00000031326 (Cdx4)
MGIMGI:88362 (Cdx4)
EMBLAJ421480, AL669964, BC119158, CH466564, L08061
Uniprot/SPTREMBLQ78Z64, Q78Z64_MOUSE
Uniprot/SWISSPROTCDX4_MOUSE, Q07424

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