M. musculus Gene: Vsx1 - ENSMUSG00000033080 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000033080
NameVsx1
Descriptionvisual system homeobox 1 homolog (zebrafish) [Source:MGI Symbol;Acc:MGI:1890816]
OrganismMus musculus (mouse)
Synonym(s)chx10-like, rinx
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
9.26e3
  • 9.26e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:0000024Theiler stage 17 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000061early adult stage
1.04e4
  • 1.04e4
  • 1.64e4
  • 1.83e4
  • 1.97e4
  • 2.04e4
  • 2.17e4
75.00
  • 75.00
  • 60.65
  • 56.15
  • 52.64
  • 50.93
  • 47.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
  • 2.51e4
  • 2.57e4
  • 3.28e4
74.57
  • 74.57
  • 39.65
  • 38.24
  • 21.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:0000061early adult stage
1.11e4
  • 1.11e4
  • 1.31e4
  • 1.37e4
  • 1.43e4
  • 1.45e4
  • 1.49e4
  • 1.49e4
  • 1.86e4
  • 1.93e4
73.39
  • 73.39
  • 68.48
  • 67.18
  • 65.74
  • 65.25
  • 64.33
  • 64.23
  • 55.49
  • 53.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000484 weeks (mouse)
1.17e4
  • 1.17e4
  • 1.98e4
  • 2.01e4
71.99
  • 71.99
  • 52.43
  • 51.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • UBERON:0000110neurula stage
  • MmusDv:0000015Theiler stage 10 (mouse)
1.21e4
  • 1.21e4
  • 1.95e4
70.90
  • 70.90
  • 53.09
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.36e4
  • 1.36e4
  • 2.32e4
  • 2.36e4
  • 2.50e4
  • 2.59e4
  • 2.66e4
  • 3.02e4
67.40
  • 67.40
  • 44.28
  • 43.43
  • 40.01
  • 37.97
  • 36.06
  • 27.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.54e4
  • 1.54e4
  • 1.62e4
  • 2.11e4
  • 2.46e4
62.98
  • 62.98
  • 61.14
  • 49.44
  • 40.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00001134-7 days (mouse)
1.56e4
  • 1.56e4
  • 2.13e4
  • 2.67e4
62.56
  • 62.56
  • 48.82
  • 35.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004362pharyngeal arch 1
  • MmusDv:0000024Theiler stage 17 (mouse)
1.60e4
  • 1.60e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
1.64e4
  • 1.64e4
  • 2.18e4
  • 2.38e4
  • 2.52e4
  • 2.52e4
  • 2.55e4
60.70
  • 60.70
  • 47.72
  • 42.95
  • 39.63
  • 39.62
  • 38.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.64e4
  • 1.64e4
  • 2.35e4
60.59
  • 60.59
  • 43.51
AEIR
  • AEIR
  • AEIR
UBERON:0000358blastocyst
  • MmusDv:0000008Theiler stage 04 (mouse)
  • UBERON:0000108blastula stage
1.69e4
  • 1.69e4
  • 1.94e4
59.42
  • 59.42
  • 53.42
AEIR
  • AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
1.73e4
  • 1.73e4
58.47
  • 58.47
AEIR
  • AEIR
UBERON:0002167right lung
  • MmusDv:00000633 month-old stage (mouse)
1.76e4
  • 1.76e4
57.72
  • 57.72
AEIR
  • AEIR
UBERON:0001987placenta
  • MmusDv:0000021Theiler stage 14 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.81e4
  • 1.81e4
  • 2.23e4
  • 2.35e4
  • 2.51e4
56.57
  • 56.57
  • 46.51
  • 43.51
  • 39.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
1.87e4
  • 1.87e4
55.18
  • 55.18
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
  • 1.96e4
  • 2.08e4
  • 2.21e4
  • 2.36e4
  • 2.50e4
  • 3.20e4
  • 3.40e4
54.58
  • 54.58
  • 52.96
  • 50.06
  • 46.86
  • 43.27
  • 39.92
  • 23.13
  • 18.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.90e4
  • 1.90e4
  • 1.91e4
  • 2.32e4
54.45
  • 54.45
  • 54.07
  • 44.34
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.99e4
  • 1.99e4
52.31
  • 52.31
AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000034Theiler stage 25 (mouse)
1.99e4
  • 1.99e4
  • 2.16e4
  • 2.17e4
  • 2.26e4
  • 2.26e4
  • 2.41e4
  • 2.42e4
  • 2.50e4
  • 2.50e4
  • 2.51e4
  • 2.54e4
  • 2.55e4
  • 2.56e4
  • 2.56e4
  • 2.66e4
  • 2.73e4
52.16
  • 52.16
  • 48.21
  • 48.03
  • 45.77
  • 45.76
  • 42.26
  • 41.99
  • 39.95
  • 39.92
  • 39.65
  • 39.00
  • 38.81
  • 38.59
  • 38.58
  • 36.11
  • 34.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
  • 2.04e4
  • 2.26e4
  • 2.38e4
  • 2.55e4
  • 3.04e4
52.12
  • 52.12
  • 51.08
  • 45.81
  • 42.87
  • 38.77
  • 27.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • UBERON:0000110neurula stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
2.00e4
  • 2.00e4
  • 2.19e4
  • 2.20e4
  • 2.23e4
  • 2.33e4
  • 2.42e4
52.00
  • 52.00
  • 47.56
  • 47.19
  • 46.42
  • 44.20
  • 41.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:000005410 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
  • 2.17e4
  • 2.53e4
  • 2.55e4
  • 2.59e4
  • 2.79e4
  • 2.87e4
51.35
  • 51.35
  • 47.94
  • 39.18
  • 38.90
  • 37.76
  • 33.05
  • 31.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007221neonate stage
2.06e4
  • 2.06e4
50.58
  • 50.58
AEIR
  • AEIR
UBERON:0000081metanephros
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
2.09e4
  • 2.09e4
  • 2.46e4
49.96
  • 49.96
  • 40.96
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000113post-juvenile adult stage
2.10e4
  • 2.10e4
  • 2.12e4
  • 2.16e4
  • 2.20e4
  • 2.74e4
  • 2.86e4
  • 3.16e4
  • 3.26e4
49.60
  • 49.60
  • 49.04
  • 48.18
  • 47.26
  • 34.26
  • 31.32
  • 24.28
  • 21.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.11e4
  • 2.11e4
  • 2.19e4
  • 2.24e4
  • 2.29e4
  • 2.54e4
  • 2.91e4
49.44
  • 49.44
  • 47.53
  • 46.31
  • 44.95
  • 39.07
  • 30.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001040yolk sac
  • MmusDv:0000023Theiler stage 16 (mouse)
2.15e4
  • 2.15e4
48.49
  • 48.49
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
  • 2.19e4
  • 2.29e4
  • 2.37e4
  • 2.54e4
  • 2.57e4
48.48
  • 48.48
  • 47.39
  • 45.15
  • 43.22
  • 39.08
  • 38.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.18e4
  • 2.18e4
  • 2.38e4
  • 2.59e4
  • 3.00e4
  • 3.22e4
47.60
  • 47.60
  • 42.87
  • 37.88
  • 28.11
  • 22.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
2.23e4
  • 2.23e4
  • 2.29e4
46.40
  • 46.40
  • 44.97
AEIR
  • AEIR
  • AEIR
UBERON:0002108small intestine
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.30e4
  • 2.30e4
  • 2.59e4
44.77
  • 44.77
  • 37.78
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
2.34e4
  • 2.34e4
  • 2.47e4
43.73
  • 43.73
  • 40.68
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.37e4
  • 2.37e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0000947aorta
  • MmusDv:0000097late adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000076aged adult stage (mouse)
2.37e4
  • 2.37e4
  • 2.51e4
  • 2.55e4
43.13
  • 43.13
  • 39.67
  • 38.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.38e4
  • 2.38e4
42.98
  • 42.98
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
2.40e4
  • 2.40e4
42.48
  • 42.48
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • MmusDv:0000033Theiler stage 24 (mouse)
2.43e4
  • 2.43e4
41.77
  • 41.77
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.43e4
  • 2.43e4
41.70
  • 41.70
AEIR
  • AEIR
UBERON:00072381st arch maxillary component
  • MmusDv:0000024Theiler stage 17 (mouse)
2.46e4
  • 2.46e4
41.05
  • 41.05
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0000104life cycle
2.47e4
  • 2.47e4
40.84
  • 40.84
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.50e4
  • 2.50e4
40.07
  • 40.07
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000066fully formed stage
2.56e4
  • 2.56e4
38.65
  • 38.65
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
2.60e4
  • 2.60e4
37.71
  • 37.71
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.64e4
  • 2.64e4
36.73
  • 36.73
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.94e4
  • 2.94e4
29.36
  • 29.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000033080.

Cross-references

CCDSCCDS16860 (CCDS16860.1)
EnsemblENSMUSG00000033080 (Vsx1)
MGIMGI:1890816 (Vsx1)
EMBLAF391757, AF391758, AF395732, AL845174, AY056825, BC057647, BC138456, BC138460
Uniprot/SPTREMBLA2AQX5, A2AQX5_MOUSE
Uniprot/SWISSPROTQ91V10, VSX1_MOUSE

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