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M. musculus Gene: Htr2a - ENSMUSG00000034997 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000034997
NameHtr2a
Description5-hydroxytryptamine (serotonin) receptor 2A [Source:MGI Symbol;Acc:MGI:109521]
OrganismMus musculus (mouse)
Synonym(s)5-ht2a receptor, e030013e04, htr-2, htr2
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
4.39e3
  • 4.39e3
  • 1.83e4
89.47
  • 89.47
  • 56.03
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0000112sexually immature stage
5.79e3
  • 5.79e3
86.11
  • 86.11
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000112sexually immature stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
  • 1.07e4
  • 1.11e4
  • 1.15e4
  • 1.38e4
84.09
  • 84.09
  • 74.26
  • 73.29
  • 72.30
  • 66.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
6.97e3
  • 6.97e3
83.28
  • 83.28
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000112sexually immature stage
  • UBERON:0000066fully formed stage
  • MmusDv:0000032Theiler stage 23 (mouse)
7.29e3
  • 7.29e3
  • 1.30e4
  • 1.39e4
82.50
  • 82.50
  • 68.86
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
7.70e3
  • 7.70e3
81.53
  • 81.53
AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0000112sexually immature stage
  • UBERON:0007221neonate stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
8.34e3
  • 8.34e3
  • 1.31e4
  • 1.42e4
  • 1.50e4
  • 1.64e4
  • 1.73e4
  • 2.02e4
80.00
  • 80.00
  • 68.59
  • 66.00
  • 64.07
  • 60.63
  • 58.57
  • 51.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000112sexually immature stage
8.88e3
  • 8.88e3
  • 1.07e4
  • 1.23e4
78.69
  • 78.69
  • 74.35
  • 70.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
  • 1.65e4
  • 1.72e4
  • 2.03e4
78.26
  • 78.26
  • 60.30
  • 58.68
  • 51.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
9.23e3
  • 9.23e3
77.85
  • 77.85
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
9.94e3
  • 9.94e3
76.15
  • 76.15
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
1.03e4
  • 1.03e4
  • 1.26e4
  • 1.48e4
  • 1.71e4
  • 3.11e4
75.24
  • 75.24
  • 69.66
  • 64.53
  • 59.04
  • 25.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000112sexually immature stage
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.32e4
74.99
  • 74.99
  • 68.29
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
74.99
  • 74.99
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.11e4
  • 1.11e4
73.47
  • 73.47
AEIR
  • AEIR
UBERON:0002028hindbrain
  • UBERON:0007221neonate stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.14e4
  • 1.14e4
  • 1.32e4
  • 1.42e4
  • 1.60e4
  • 1.73e4
  • 2.29e4
72.62
  • 72.62
  • 68.36
  • 65.94
  • 61.62
  • 58.51
  • 45.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
69.61
  • 69.61
AEIR
  • AEIR
UBERON:0001890forebrain
  • UBERON:0007221neonate stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.27e4
  • 1.27e4
  • 1.45e4
  • 1.52e4
  • 1.88e4
  • 2.12e4
  • 2.35e4
69.45
  • 69.45
  • 65.32
  • 63.53
  • 54.98
  • 49.17
  • 43.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:0000032Theiler stage 23 (mouse)
1.30e4
  • 1.30e4
68.75
  • 68.75
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000112sexually immature stage
  • MmusDv:0000032Theiler stage 23 (mouse)
1.35e4
  • 1.35e4
  • 1.56e4
67.64
  • 67.64
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
67.60
  • 67.60
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
1.36e4
  • 1.36e4
67.42
  • 67.42
AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.38e4
  • 1.38e4
  • 1.75e4
  • 1.78e4
66.89
  • 66.89
  • 58.00
  • 57.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
66.03
  • 66.03
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:0000024Theiler stage 17 (mouse)
1.51e4
  • 1.51e4
  • 1.59e4
  • 1.65e4
  • 1.67e4
  • 1.70e4
  • 1.71e4
  • 1.71e4
  • 1.75e4
  • 1.77e4
  • 1.98e4
63.82
  • 63.82
  • 61.77
  • 60.30
  • 59.98
  • 59.10
  • 59.03
  • 58.89
  • 58.13
  • 57.43
  • 52.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.56e4
  • 1.56e4
62.61
  • 62.61
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0000112sexually immature stage
1.56e4
  • 1.56e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
  • 1.75e4
  • 1.76e4
  • 2.00e4
  • 2.10e4
  • 2.23e4
62.49
  • 62.49
  • 58.07
  • 57.81
  • 51.98
  • 49.65
  • 46.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.56e4
  • 1.56e4
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.66e4
  • 1.66e4
  • 1.90e4
  • 2.17e4
60.24
  • 60.24
  • 54.48
  • 47.96
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
1.66e4
  • 1.66e4
  • 1.68e4
  • 3.30e4
60.10
  • 60.10
  • 59.65
  • 20.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
  • 1.78e4
  • 1.82e4
  • 2.50e4
  • 3.21e4
  • 3.57e4
58.75
  • 58.75
  • 57.25
  • 56.28
  • 39.93
  • 22.94
  • 14.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000066fully formed stage
1.72e4
  • 1.72e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.77e4
  • 1.77e4
57.64
  • 57.64
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.83e4
  • 1.83e4
  • 1.95e4
56.20
  • 56.20
  • 53.26
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
1.85e4
  • 1.85e4
  • 1.88e4
  • 1.90e4
  • 1.90e4
  • 2.04e4
55.71
  • 55.71
  • 54.97
  • 54.40
  • 54.34
  • 50.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
  • 2.57e4
55.60
  • 55.60
  • 38.38
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.88e4
  • 1.88e4
54.93
  • 54.93
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.89e4
  • 1.89e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:0000945stomach
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
  • 2.13e4
  • 2.55e4
  • 2.92e4
53.34
  • 53.34
  • 49.00
  • 38.76
  • 29.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.97e4
  • 1.97e4
  • 1.99e4
  • 2.02e4
  • 2.11e4
52.84
  • 52.84
  • 52.34
  • 51.49
  • 49.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
52.31
  • 52.31
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
2.01e4
  • 2.01e4
51.75
  • 51.75
AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.03e4
  • 2.03e4
  • 2.09e4
51.25
  • 51.25
  • 49.73
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.04e4
  • 2.04e4
  • 2.13e4
  • 2.40e4
51.05
  • 51.05
  • 48.78
  • 42.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.04e4
  • 2.04e4
51.01
  • 51.01
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
2.06e4
  • 2.06e4
  • 2.48e4
50.48
  • 50.48
  • 40.47
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.07e4
  • 2.07e4
  • 2.40e4
50.26
  • 50.26
  • 42.46
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.07e4
  • 2.07e4
  • 2.23e4
  • 2.29e4
50.24
  • 50.24
  • 46.47
  • 45.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • UBERON:0000113post-juvenile adult stage
2.08e4
  • 2.08e4
49.97
  • 49.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
2.09e4
  • 2.09e4
  • 2.41e4
  • 2.80e4
49.95
  • 49.95
  • 42.19
  • 32.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:00000622 month-old stage (mouse)
2.11e4
  • 2.11e4
  • 2.15e4
  • 2.18e4
49.29
  • 49.29
  • 48.41
  • 47.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.14e4
  • 2.14e4
  • 2.18e4
48.77
  • 48.77
  • 47.68
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.15e4
  • 2.15e4
48.47
  • 48.47
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
2.16e4
  • 2.16e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.17e4
  • 2.17e4
  • 3.58e4
48.02
  • 48.02
  • 14.16
AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.27e4
  • 2.27e4
45.62
  • 45.62
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
2.27e4
  • 2.27e4
45.47
  • 45.47
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
2.34e4
  • 2.34e4
43.85
  • 43.85
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0000066fully formed stage
2.41e4
  • 2.41e4
42.16
  • 42.16
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.59e4
  • 2.59e4
37.84
  • 37.84
AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000066fully formed stage
2.71e4
  • 2.71e4
35.03
  • 35.03
AEIR
  • AEIR
UBERON:0001347white adipose tissue
  • UBERON:0000066fully formed stage
2.73e4
  • 2.73e4
34.42
  • 34.42
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000066fully formed stage
2.75e4
  • 2.75e4
34.05
  • 34.05
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
2.91e4
  • 2.91e4
30.09
  • 30.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000034997.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression

Paralogy information comes from OMA : ENSMUSG00000034997.

Cross-references

CCDSCCDS27275 (CCDS27275.1)
EnsemblENSMUSG00000034997 (Htr2a)
MGIMGI:109521 (Htr2a)
EMBLAC154621, AK053140, BC108972, BC108973, CH466535, CT010510, S49542
Uniprot/SPTREMBLQ543D4, Q543D4_MOUSE
Uniprot/SWISSPROT5HT2A_MOUSE, P35363

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