M. musculus Gene: Vps13c - ENSMUSG00000035284 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000035284
NameVps13c
Descriptionvacuolar protein sorting 13C (yeast) [Source:MGI Symbol;Acc:MGI:2444207]
OrganismMus musculus (mouse)
Synonym(s)ai552542, av026040, c230055h22rik, chorein, kiaa3021, q3v3w5, q6zpe1, q8blb1, q8bqi7, w51662

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
6.38e3
  • 6.38e3
84.59732
  • 84.59732
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
6.95e3
  • 6.95e3
  • 7.59e3
  • 7.76e3
83.23064
  • 83.23064
  • 81.67979
  • 81.27038
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000104life cycle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000068embryo stage
  • MmusDv:0000020Theiler stage 13 (mouse)
6.96e3
  • 6.96e3
  • 1.86e4
  • 1.99e4
  • 2.07e4
  • 2.07e4
83.20328
  • 83.20328
  • 54.98069
  • 52.05799
  • 49.97224
  • 49.96620
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
7.15e3
  • 7.15e3
82.73573
  • 82.73573
AEIR
  • AEIR
CL:0000094granulocyte
  • MmusDv:00000622 month-old stage (mouse)
7.35e3
  • 7.35e3
82.25254
  • 82.25254
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
7.41e3
  • 7.41e3
  • 7.50e3
  • 1.78e4
  • 2.07e4
82.11898
  • 82.11898
  • 81.89701
  • 57.10181
  • 49.96620
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
7.48e3
  • 7.48e3
81.94133
  • 81.94133
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
7.49e3
  • 7.49e3
81.91354
  • 81.91354
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
7.50e3
  • 7.50e3
81.89495
  • 81.89495
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
7.99e3
  • 7.99e3
  • 8.69e3
  • 8.69e3
80.71704
  • 80.71704
  • 79.01982
  • 79.01207
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
8.09e3
  • 8.09e3
80.48286
  • 80.48286
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
8.14e3
  • 8.14e3
  • 1.15e4
  • 1.22e4
  • 1.53e4
80.35345
  • 80.35345
  • 72.23846
  • 70.54942
  • 62.95835
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000028Theiler stage 21 (mouse)
8.20e3
  • 8.20e3
  • 1.18e4
  • 1.38e4
  • 1.44e4
80.21178
  • 80.21178
  • 71.63247
  • 66.68513
  • 65.20637
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
8.24e3
  • 8.24e3
  • 9.61e3
  • 9.74e3
  • 1.63e4
  • 1.71e4
  • 2.16e4
80.11803
  • 80.11803
  • 76.80997
  • 76.49452
  • 60.62653
  • 58.67714
  • 47.84645
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
8.29e3
  • 8.29e3
  • 1.07e4
79.98916
  • 79.98916
  • 74.22648
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000451 week (mouse)
8.42e3
  • 8.42e3
  • 8.91e3
  • 1.55e4
  • 2.07e4
  • 2.07e4
79.68373
  • 79.68373
  • 78.47929
  • 62.46801
  • 49.97827
  • 49.96982
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000113post-juvenile adult stage
8.45e3
  • 8.45e3
  • 1.02e4
79.61282
  • 79.61282
  • 75.28122
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
8.49e3
  • 8.49e3
79.50748
  • 79.50748
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
8.51e3
  • 8.51e3
79.46816
  • 79.46816
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
8.58e3
  • 8.58e3
79.28711
  • 79.28711
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
8.75e3
  • 8.75e3
78.87851
  • 78.87851
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
8.77e3
  • 8.77e3
78.82960
  • 78.82960
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
8.80e3
  • 8.80e3
  • 8.82e3
  • 8.90e3
  • 9.89e3
  • 1.44e4
78.76408
  • 78.76408
  • 78.70111
  • 78.51137
  • 76.12989
  • 65.16523
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
9.01e3
  • 9.01e3
78.25727
  • 78.25727
AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
9.23e3
  • 9.23e3
77.72091
  • 77.72091
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
9.47e3
  • 9.47e3
77.12750
  • 77.12750
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
9.58e3
  • 9.58e3
76.88356
  • 76.88356
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
9.76e3
  • 9.76e3
76.43433
  • 76.43433
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.76e3
  • 9.76e3
76.42697
  • 76.42697
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0007221neonate stage
9.80e3
  • 9.80e3
  • 9.87e3
  • 1.46e4
  • 1.52e4
  • 1.58e4
76.33117
  • 76.33117
  • 76.17793
  • 64.69097
  • 63.25930
  • 61.74249
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
9.89e3
  • 9.89e3
76.13069
  • 76.13069
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
9.95e3
  • 9.95e3
75.97296
  • 75.97296
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.01e4
  • 1.01e4
75.57197
  • 75.57197
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
75.51589
  • 75.51589
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.02e4
  • 1.02e4
  • 1.02e4
75.46497
  • 75.46497
  • 75.29189
AEIR
  • AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
1.07e4
  • 1.07e4
74.25046
  • 74.25046
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
1.07e4
  • 1.07e4
74.10908
  • 74.10908
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.09e4
  • 1.09e4
  • 1.11e4
  • 1.17e4
73.73805
  • 73.73805
  • 73.18117
  • 71.86736
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
73.73732
  • 73.73732
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
1.09e4
  • 1.09e4
73.59131
  • 73.59131
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000451 week (mouse)
1.14e4
  • 1.14e4
  • 1.15e4
  • 2.07e4
72.55423
  • 72.55423
  • 72.14430
  • 49.96620
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.15e4
  • 1.15e4
  • 1.18e4
72.34256
  • 72.34256
  • 71.60493
AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
1.16e4
  • 1.16e4
71.98518
  • 71.98518
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.16e4
  • 1.16e4
  • 1.17e4
  • 1.17e4
  • 1.18e4
  • 1.21e4
71.95162
  • 71.95162
  • 71.76258
  • 71.63926
  • 71.58986
  • 70.79273
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
1.16e4
  • 1.16e4
71.90599
  • 71.90599
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • MmusDv:00000528 weeks (mouse)
1.17e4
  • 1.17e4
  • 1.33e4
  • 1.40e4
71.67849
  • 71.67849
  • 67.99614
  • 66.19025
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.21e4
  • 1.21e4
70.87035
  • 70.87035
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
70.17042
  • 70.17042
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
70.07062
  • 70.07062
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
69.60666
  • 69.60666
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
68.30285
  • 68.30285
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
68.18687
  • 68.18687
AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000015Theiler stage 10 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • UBERON:0000068embryo stage
1.36e4
  • 1.36e4
  • 1.41e4
  • 1.63e4
  • 2.00e4
67.05333
  • 67.05333
  • 65.88682
  • 60.58375
  • 51.64640
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009953post-embryonic organism
  • UBERON:0000104life cycle
1.97e4
  • 1.97e4
52.35922
  • 52.35922
AEIR
  • AEIR
MA:0000187neocortex region (mouse)
  • UBERON:0000104life cycle
2.04e4
  • 2.04e4
50.83730
  • 50.83730
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

CCDSCCDS40676 (CCDS40676.1)
EMBLAB281675, AC156799, AK030931, AK045749, AK048766, AK049557, AK129486
EnsemblENSMUSG00000035284 (Vps13c)
MGIMGI:2444207 (Vps13c)
Uniprot/SPTREMBLA1ILG8, A1ILG8_MOUSE
Uniprot/SWISSPROTQ8BX70, VP13C_MOUSE

Do not show this banner again