M. musculus Gene: Vps13c - ENSMUSG00000035284 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000035284
NameVps13c
Descriptionvacuolar protein sorting 13C (yeast) [Source:MGI Symbol;Acc:MGI:2444207]
OrganismMus musculus (mouse)
Synonym(s)ai552542, av026040, c230055h22rik, chorein, kiaa3021, q3v3w5, q6zpe1, q8blb1, q8bqi7, w51662

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
6.95e3
  • 6.95e3
83.06906
  • 83.06906
AEIR
  • AEIR
UBERON:0002370thymus
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000462 weeks (mouse)
7.50e3
  • 7.50e3
  • 1.76e4
  • 1.96e4
  • 2.05e4
81.72358
  • 81.72358
  • 57.10143
  • 52.24958
  • 49.96587
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
8.09e3
  • 8.09e3
80.29494
  • 80.29494
AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000104life cycle
8.20e3
  • 8.20e3
  • 1.18e4
  • 1.43e4
  • 2.06e4
80.02303
  • 80.02303
  • 71.36003
  • 65.20626
  • 49.77268
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:000005511 weeks (mouse)
8.26e3
  • 8.26e3
  • 8.41e3
  • 9.89e3
79.86546
  • 79.86546
  • 79.51444
  • 75.90006
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
8.29e3
  • 8.29e3
  • 1.07e4
79.79647
  • 79.79647
  • 73.97836
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000451 week (mouse)
8.42e3
  • 8.42e3
  • 8.91e3
  • 1.54e4
  • 2.05e4
  • 2.05e4
79.48812
  • 79.48812
  • 78.27180
  • 62.46771
  • 49.97806
  • 49.96953
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
8.49e3
  • 8.49e3
79.31018
  • 79.31018
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
8.69e3
  • 8.69e3
  • 8.90e3
78.81055
  • 78.81055
  • 78.30374
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
9.23e3
  • 9.23e3
77.50640
  • 77.50640
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.76e3
  • 9.76e3
76.20029
  • 76.20029
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000112sexually immature stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0007221neonate stage
9.77e3
  • 9.77e3
  • 1.01e4
  • 1.52e4
  • 2.37e4
76.17782
  • 76.17782
  • 75.45241
  • 62.90555
  • 42.32106
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
9.95e3
  • 9.95e3
75.74162
  • 75.74162
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000028Theiler stage 21 (mouse)
1.05e4
  • 1.05e4
  • 1.26e4
74.30961
  • 74.30961
  • 69.26267
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000451 week (mouse)
1.14e4
  • 1.14e4
  • 1.15e4
  • 2.05e4
72.28990
  • 72.28990
  • 71.87610
  • 49.96587
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.15e4
  • 1.15e4
  • 1.18e4
72.07628
  • 72.07628
  • 71.33224
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.17e4
  • 1.17e4
  • 1.40e4
71.56227
  • 71.56227
  • 65.86472
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
1.23e4
  • 1.23e4
  • 1.43e4
  • 1.45e4
  • 1.72e4
  • 2.16e4
70.02438
  • 70.02438
  • 65.03712
  • 64.56154
  • 57.98187
  • 47.34430
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000015Theiler stage 10 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • UBERON:0000068embryo stage
1.35e4
  • 1.35e4
  • 1.40e4
  • 1.62e4
  • 1.98e4
67.05314
  • 67.05314
  • 65.88660
  • 60.58353
  • 51.64546
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
63.39518
  • 63.39518
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
62.01777
  • 62.01777
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000068embryo stage
  • MmusDv:0000020Theiler stage 13 (mouse)
1.85e4
  • 1.85e4
  • 1.97e4
  • 2.05e4
  • 2.05e4
54.98050
  • 54.98050
  • 52.05775
  • 49.97197
  • 49.96587
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009953post-embryonic organism
  • UBERON:0000104life cycle
1.95e4
  • 1.95e4
52.35902
  • 52.35902
AEIR
  • AEIR
MA:0000187neocortex region (mouse)
  • UBERON:0000104life cycle
2.02e4
  • 2.02e4
50.83517
  • 50.83517
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000068embryo stage
2.05e4
  • 2.05e4
49.94028
  • 49.94028
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

CCDSCCDS40676 (CCDS40676.1)
EMBLAB281675, AC156799, AK030931, AK045749, AK048766, AK049557, AK129486
EnsemblENSMUSG00000035284 (Vps13c)
MGIMGI:2444207 (Vps13c)
Uniprot/SPTREMBLA1ILG8, A1ILG8_MOUSE
Uniprot/SWISSPROTQ8BX70, VP13C_MOUSE

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