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M. musculus Gene: Slc9a3 - ENSMUSG00000036123 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000036123
NameSlc9a3
Descriptionsolute carrier family 9 (sodium/hydrogen exchanger), member 3 [Source:MGI Symbol;Acc:MGI:105064]
OrganismMus musculus (mouse)
Synonym(s)9030624o13rik, ai930210, nhe-3, nhe3, q8bzu0
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
  • 1.13e4
96.69
  • 96.69
  • 72.92
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
2.98e3
  • 2.98e3
  • 4.58e3
  • 7.78e3
92.85
  • 92.85
  • 89.01
  • 81.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
  • MmusDv:0000035Theiler stage 26 (mouse)
3.37e3
  • 3.37e3
  • 1.39e4
91.91
  • 91.91
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
3.75e3
  • 3.75e3
91.01
  • 91.01
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
4.50e3
  • 4.50e3
89.20
  • 89.20
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
4.76e3
  • 4.76e3
88.57
  • 88.57
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
5.15e3
  • 5.15e3
87.65
  • 87.65
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
5.62e3
  • 5.62e3
86.53
  • 86.53
AEIR
  • AEIR
UBERON:0004201kidney outer medulla inner stripe
  • UBERON:0000112sexually immature stage
5.95e3
  • 5.95e3
85.71
  • 85.71
AEIR
  • AEIR
UBERON:0006853renal cortex tubule
  • MmusDv:0000035Theiler stage 26 (mouse)
6.95e3
  • 6.95e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0034996outer renal medulla loop of Henle
  • UBERON:0000112sexually immature stage
  • MmusDv:0000035Theiler stage 26 (mouse)
6.95e3
  • 6.95e3
  • 8.34e3
83.33
  • 83.33
  • 80.00
AEIR
  • AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
7.35e3
  • 7.35e3
  • 1.04e4
82.36
  • 82.36
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0003455inner renal medulla loop of Henle
  • MmusDv:0000035Theiler stage 26 (mouse)
8.34e3
  • 8.34e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0006541outer medulla inner stripe loop of Henle
  • UBERON:0000112sexually immature stage
8.34e3
  • 8.34e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.23e3
  • 9.23e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0000081metanephros
  • UBERON:0000112sexually immature stage
  • MmusDv:0000035Theiler stage 26 (mouse)
9.26e3
  • 9.26e3
  • 1.04e4
77.78
  • 77.78
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0001040yolk sac
  • MmusDv:0000023Theiler stage 16 (mouse)
1.06e4
  • 1.06e4
74.51
  • 74.51
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
74.00
  • 74.00
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.11e4
  • 1.11e4
  • 1.35e4
73.25
  • 73.25
  • 67.60
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.15e4
  • 1.15e4
  • 1.27e4
  • 1.65e4
72.51
  • 72.51
  • 69.41
  • 60.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
69.71
  • 69.71
AEIR
  • AEIR
EMAPA:28003early proximal tubule (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.39e4
  • 1.39e4
66.67
  • 66.67
AEIR
  • AEIR
EMAPA:31281anlage of loop of Henle of cortical renal tubule (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.39e4
  • 1.39e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001287proximal convoluted tubule
  • MmusDv:0000035Theiler stage 26 (mouse)
1.39e4
  • 1.39e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
1.41e4
  • 1.41e4
  • 1.70e4
  • 1.71e4
66.25
  • 66.25
  • 59.09
  • 58.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.42e4
  • 1.42e4
  • 1.68e4
66.03
  • 66.03
  • 59.66
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
1.51e4
  • 1.51e4
  • 1.81e4
  • 2.00e4
  • 2.00e4
  • 2.55e4
63.72
  • 63.72
  • 56.65
  • 52.12
  • 51.92
  • 38.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
1.53e4
  • 1.53e4
  • 1.93e4
  • 2.50e4
  • 2.55e4
  • 3.11e4
63.33
  • 63.33
  • 53.63
  • 40.06
  • 38.80
  • 25.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
1.53e4
  • 1.53e4
63.29
  • 63.29
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.54e4
  • 1.54e4
62.98
  • 62.98
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.57e4
  • 1.57e4
  • 1.71e4
  • 1.93e4
  • 2.02e4
62.35
  • 62.35
  • 58.92
  • 53.62
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000644 month-old stage (mouse)
1.61e4
  • 1.61e4
  • 1.94e4
61.40
  • 61.40
  • 53.46
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
1.61e4
  • 1.61e4
  • 2.73e4
61.29
  • 61.29
  • 34.39
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
1.66e4
  • 1.66e4
  • 1.97e4
  • 3.30e4
60.15
  • 60.15
  • 52.71
  • 20.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.69e4
  • 1.69e4
59.54
  • 59.54
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
58.79
  • 58.79
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.77e4
  • 1.77e4
57.46
  • 57.46
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.78e4
  • 1.78e4
57.35
  • 57.35
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
  • 2.55e4
  • 2.87e4
  • 2.89e4
  • 2.99e4
57.07
  • 57.07
  • 38.81
  • 31.06
  • 30.67
  • 28.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.82e4
  • 1.82e4
56.35
  • 56.35
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
  • 1.95e4
  • 2.01e4
  • 2.07e4
56.23
  • 56.23
  • 53.29
  • 51.65
  • 50.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
55.44
  • 55.44
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
1.94e4
  • 1.94e4
  • 2.51e4
53.42
  • 53.42
  • 39.84
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.98e4
  • 1.98e4
52.44
  • 52.44
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
49.55
  • 49.55
AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0007221neonate stage
2.11e4
  • 2.11e4
49.33
  • 49.33
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
2.12e4
  • 2.12e4
49.12
  • 49.12
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.12e4
  • 2.12e4
49.07
  • 49.07
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.21e4
  • 2.21e4
47.02
  • 47.02
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
2.22e4
  • 2.22e4
46.76
  • 46.76
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
  • 2.59e4
  • 2.67e4
45.55
  • 45.55
  • 37.85
  • 35.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • UBERON:0007221neonate stage
2.35e4
  • 2.35e4
43.50
  • 43.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
2.37e4
  • 2.37e4
  • 2.43e4
  • 2.53e4
43.10
  • 43.10
  • 41.62
  • 39.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000066fully formed stage
2.42e4
  • 2.42e4
42.01
  • 42.01
AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000032Theiler stage 23 (mouse)
2.50e4
  • 2.50e4
39.96
  • 39.96
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
2.57e4
  • 2.57e4
  • 2.83e4
38.40
  • 38.40
  • 32.16
AEIR
  • AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.60e4
  • 2.60e4
37.60
  • 37.60
AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000066fully formed stage
2.68e4
  • 2.68e4
35.77
  • 35.77
AEIR
  • AEIR
UBERON:0002106spleen
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.72e4
  • 2.72e4
  • 2.87e4
  • 3.70e4
34.72
  • 34.72
  • 31.05
  • 11.20
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000036123.

Cross-references

CCDSCCDS36731 (CCDS36731.1)
EnsemblENSMUSG00000036123 (Slc9a3)
MGIMGI:105064 (Slc9a3)
EMBLAC154839, AK033564, CH466563
Uniprot/SWISSPROTG3X939, SL9A3_MOUSE

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