M. musculus Gene: Hoxc9 - ENSMUSG00000036139 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000036139
NameHoxc9
Descriptionhomeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
OrganismMus musculus (mouse)
Synonym(s)hox-3.2, hoxc-9

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002103hindlimb
  • MmusDv:0000028Theiler stage 21 (mouse)
2.56e3
  • 2.56e3
AEIR
  • AEIR
UBERON:0000081metanephros
  • MmusDv:0000034Theiler stage 25 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
3.11e3
  • 3.11e3
  • 1.26e4
  • 1.26e4
  • 1.27e4
  • 1.32e4
  • 1.57e4
  • 1.58e4
  • 1.71e4
  • 1.71e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0007221neonate stage
3.73e3
  • 3.73e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • MmusDv:0000022Theiler stage 15 (mouse)
5.09e3
  • 5.09e3
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
5.13e3
  • 5.13e3
  • 1.23e4
AEIR
  • AEIR
  • AEIR
UBERON:0003918kidney mesenchyme
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
5.13e3
  • 5.13e3
  • 1.37e4
  • 1.37e4
  • 1.47e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:000005410 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000035Theiler stage 26 (mouse)
5.93e3
  • 5.93e3
  • 8.67e3
  • 9.73e3
  • 1.08e4
  • 1.14e4
  • 1.15e4
  • 1.96e4
  • 2.10e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
6.16e3
  • 6.16e3
  • 1.06e4
  • 1.41e4
  • 1.50e4
  • 1.80e4
  • 1.90e4
  • 2.43e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004256hindlimb zeugopod muscle
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000495 weeks (mouse)
6.16e3
  • 6.16e3
  • 6.28e3
  • 6.39e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012238ureteric bud trunk
  • MmusDv:0000032Theiler stage 23 (mouse)
6.31e3
  • 6.31e3
AEIR
  • AEIR
UBERON:0001386extensor digitorum longus
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000075middle aged stage (mouse)
6.38e3
  • 6.38e3
  • 8.41e3
AEIR
  • AEIR
  • AEIR
UBERON:0001665triceps surae
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
6.58e3
  • 6.58e3
  • 6.69e3
  • 6.70e3
  • 6.78e3
  • 6.96e3
  • 7.70e3
  • 7.92e3
  • 1.19e4
  • 1.73e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000097late adult stage
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
6.79e3
  • 6.79e3
  • 1.59e4
  • 1.67e4
  • 1.74e4
  • 1.76e4
  • 1.84e4
  • 1.89e4
  • 1.92e4
  • 2.01e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005215kidney interstitium
  • MmusDv:0000032Theiler stage 23 (mouse)
6.84e3
  • 6.84e3
AEIR
  • AEIR
UBERON:0001389soleus muscle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000484 weeks (mouse)
7.10e3
  • 7.10e3
  • 1.02e4
  • 1.19e4
  • 1.19e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005107metanephric cap
  • MmusDv:0000032Theiler stage 23 (mouse)
7.18e3
  • 7.18e3
AEIR
  • AEIR
EMAPA:28500early tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
7.24e3
  • 7.24e3
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000462 weeks (mouse)
7.35e3
  • 7.35e3
  • 7.56e3
  • 7.93e3
  • 1.13e4
  • 1.16e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
  • 1.28e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
7.84e3
  • 7.84e3
  • 8.42e3
  • 1.09e4
  • 1.25e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000097late adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000539 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • UBERON:0000104life cycle
7.88e3
  • 7.88e3
  • 8.21e3
  • 9.78e3
  • 9.80e3
  • 1.05e4
  • 1.05e4
  • 1.23e4
  • 1.60e4
  • 1.61e4
  • 1.69e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001334female urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
7.89e3
  • 7.89e3
AEIR
  • AEIR
UBERON:0011905plantaris
  • MmusDv:0000075middle aged stage (mouse)
7.96e3
  • 7.96e3
AEIR
  • AEIR
UBERON:0004876urogenital fold
  • MmusDv:0000024Theiler stage 17 (mouse)
7.97e3
  • 7.97e3
AEIR
  • AEIR
UBERON:0003428gonadal fat pad
  • MmusDv:00000695 month-old stage (mouse)
8.05e3
  • 8.05e3
AEIR
  • AEIR
UBERON:0001385tibialis anterior
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
8.13e3
  • 8.13e3
  • 9.10e3
  • 9.56e3
  • 1.07e4
  • 1.16e4
  • 1.70e4
  • 1.96e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • MmusDv:00000506 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
8.14e3
  • 8.14e3
  • 1.65e4
  • 1.70e4
AEIR
  • AEIR
  • AEIR
  • AEIR
EMAPA:28527late tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
8.21e3
  • 8.21e3
AEIR
  • AEIR
UBERON:0003517kidney blood vessel
  • MmusDv:0000032Theiler stage 23 (mouse)
8.21e3
  • 8.21e3
AEIR
  • AEIR
UBERON:0001488ankle joint
  • UBERON:0000113post-juvenile adult stage
9.16e3
  • 9.16e3
AEIR
  • AEIR
UBERON:0010412epididymal fat pad
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000097late adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:000005410 weeks (mouse)
9.48e3
  • 9.48e3
  • 1.67e4
  • 2.01e4
  • 2.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
9.58e3
  • 9.58e3
  • 9.59e3
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
1.00e4
  • 1.00e4
AEIR
  • AEIR
EMAPA:28753pelvic urethra of female (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.03e4
  • 1.03e4
AEIR
  • AEIR
UBERON:0003328mesenchyme of footplate
  • MmusDv:0000028Theiler stage 21 (mouse)
1.03e4
  • 1.03e4
AEIR
  • AEIR
UBERON:0005598trunk somite
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.03e4
  • 1.03e4
  • 1.49e4
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.03e4
  • 1.03e4
  • 1.09e4
  • 1.23e4
  • 1.37e4
  • 1.42e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003134female reproductive organ
  • MmusDv:0000032Theiler stage 23 (mouse)
1.03e4
  • 1.03e4
AEIR
  • AEIR
UBERON:0001485knee joint
  • MmusDv:00000633 month-old stage (mouse)
1.05e4
  • 1.05e4
AEIR
  • AEIR
UBERON:0011907gastrocnemius medialis
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
1.08e4
  • 1.08e4
  • 1.09e4
  • 1.66e4
  • 2.00e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.09e4
  • 1.09e4
  • 1.47e4
  • 1.64e4
  • 1.64e4
  • 1.86e4
  • 2.09e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004645urinary bladder urothelium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.12e4
  • 1.12e4
AEIR
  • AEIR
UBERON:0001911mammary gland
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000097late adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000517 weeks (mouse)
1.15e4
  • 1.15e4
  • 1.71e4
  • 1.74e4
  • 1.81e4
  • 1.95e4
  • 2.01e4
  • 2.26e4
  • 2.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000079male reproductive system
  • MmusDv:0000029Theiler stage 22 (mouse)
1.16e4
  • 1.16e4
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:00000506 weeks (mouse)
1.17e4
  • 1.17e4
  • 1.19e4
  • 1.31e4
  • 1.36e4
  • 1.67e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0007221neonate stage
  • UBERON:0000104life cycle
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000473 weeks (mouse)
1.18e4
  • 1.18e4
  • 1.57e4
  • 1.76e4
  • 1.86e4
  • 1.88e4
  • 1.90e4
  • 1.92e4
  • 1.93e4
  • 1.94e4
  • 1.95e4
  • 1.96e4
  • 1.97e4
  • 2.01e4
  • 2.05e4
  • 2.08e4
  • 2.20e4
  • 2.23e4
  • 2.28e4
  • 2.29e4
  • 2.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003697abdominal wall
  • MmusDv:0000024Theiler stage 17 (mouse)
1.19e4
  • 1.19e4
AEIR
  • AEIR
EMAPA:17246handplate ectoderm (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.23e4
  • 1.23e4
AEIR
  • AEIR
EMAPA:17582basal columns (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.23e4
  • 1.23e4
AEIR
  • AEIR
EMAPA:28759epithelium of pelvic urethra of female (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.23e4
  • 1.23e4
AEIR
  • AEIR
EMAPA:28765mesenchymal layer of pelvic urethra of female (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.23e4
  • 1.23e4
  • 1.33e4
  • 1.77e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001103diaphragm
  • MmusDv:0000061early adult stage
  • MmusDv:00001134-7 days (mouse)
1.24e4
  • 1.24e4
  • 1.77e4
AEIR
  • AEIR
  • AEIR
UBERON:0001322sciatic nerve
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000061early adult stage
1.24e4
  • 1.24e4
  • 1.25e4
  • 1.66e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001347white adipose tissue
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:0000097late adult stage
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.25e4
  • 1.25e4
  • 1.35e4
  • 1.41e4
  • 1.51e4
  • 1.51e4
  • 1.56e4
  • 1.93e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008424inguinal mammary gland
  • MmusDv:000005410 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000473 weeks (mouse)
1.25e4
  • 1.25e4
  • 1.29e4
  • 1.35e4
  • 1.35e4
  • 1.55e4
  • 1.74e4
  • 1.75e4
  • 1.78e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.72e4
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
  • MmusDv:000005410 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
  • 1.49e4
  • 1.69e4
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.31e4
  • 1.31e4
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.32e4
  • 1.32e4
  • 1.62e4
  • 1.88e4
  • 2.08e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000005Theiler stage 02 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000106zygote stage
1.33e4
  • 1.33e4
  • 1.57e4
  • 1.59e4
  • 1.70e4
  • 1.73e4
  • 1.74e4
  • 1.83e4
  • 1.96e4
  • 1.98e4
  • 2.01e4
  • 2.09e4
  • 2.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • UBERON:0007221neonate stage
  • MmusDv:00000622 month-old stage (mouse)
1.34e4
  • 1.34e4
  • 2.36e4
AEIR
  • AEIR
  • AEIR
UBERON:0006862diaphysis of femur
  • MmusDv:00000495 weeks (mouse)
1.35e4
  • 1.35e4
AEIR
  • AEIR
UBERON:0004340allantois
  • MmusDv:0000021Theiler stage 14 (mouse)
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0009621tail somite
  • MmusDv:0000025Theiler stage 18 (mouse)
1.37e4
  • 1.37e4
AEIR
  • AEIR
EMAPA:28607urothelium of bladder fundus (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000026Theiler stage 19 (mouse)
1.37e4
  • 1.37e4
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000029Theiler stage 22 (mouse)
1.37e4
  • 1.37e4
  • 2.32e4
  • 2.37e4
  • 2.52e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005147metanephric renal vesicle
  • MmusDv:0000027Theiler stage 20 (mouse)
1.39e4
  • 1.39e4
AEIR
  • AEIR
UBERON:0002257ventral horn of spinal cord
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000032Theiler stage 23 (mouse)
1.40e4
  • 1.40e4
  • 1.42e4
  • 1.98e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003220metanephric mesenchyme
  • MmusDv:0000026Theiler stage 19 (mouse)
1.40e4
  • 1.40e4
AEIR
  • AEIR
UBERON:0005148metanephric S-shaped body
  • MmusDv:0000032Theiler stage 23 (mouse)
1.43e4
  • 1.43e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
1.44e4
  • 1.44e4
  • 1.50e4
  • 1.58e4
  • 1.64e4
  • 1.74e4
  • 1.79e4
  • 2.04e4
  • 2.07e4
  • 2.11e4
  • 2.15e4
  • 2.17e4
  • 2.41e4
  • 2.43e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009117indifferent gonad
  • MmusDv:0000026Theiler stage 19 (mouse)
1.45e4
  • 1.45e4
AEIR
  • AEIR
UBERON:0001068skin of back
  • MmusDv:00000695 month-old stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000539 weeks (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000495 weeks (mouse)
1.45e4
  • 1.45e4
  • 1.68e4
  • 1.74e4
  • 1.75e4
  • 1.89e4
  • 1.93e4
  • 1.94e4
  • 2.00e4
  • 2.14e4
  • 2.31e4
  • 2.45e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000711cumulus cell
  • MmusDv:0000061early adult stage
1.47e4
  • 1.47e4
AEIR
  • AEIR
UBERON:0001229renal corpuscle
  • MmusDv:0000032Theiler stage 23 (mouse)
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0005211renal medulla interstitium
  • MmusDv:0000032Theiler stage 23 (mouse)
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0006364ureteric bud tip
  • MmusDv:0000032Theiler stage 23 (mouse)
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0005185renal medulla collecting duct
  • MmusDv:0000032Theiler stage 23 (mouse)
1.53e4
  • 1.53e4
AEIR
  • AEIR
UBERON:0001017central nervous system
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
1.54e4
  • 1.54e4
  • 2.05e4
  • 2.05e4
  • 2.06e4
  • 2.15e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0007221neonate stage
1.60e4
  • 1.60e4
  • 1.64e4
  • 1.65e4
  • 1.67e4
  • 2.31e4
  • 2.50e4
  • 2.51e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:00000528 weeks (mouse)
1.62e4
  • 1.62e4
AEIR
  • AEIR
UBERON:0004454tarsal region
  • MmusDv:00000506 weeks (mouse)
1.63e4
  • 1.63e4
AEIR
  • AEIR
UBERON:0002067dermis
  • MmusDv:0000032Theiler stage 23 (mouse)
1.63e4
  • 1.63e4
AEIR
  • AEIR
EMAPA:30081urothelium of ventral bladder neck (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.64e4
  • 1.64e4
AEIR
  • AEIR
UBERON:0002090postcranial axial skeleton
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
1.64e4
  • 1.64e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
UBERON:0002369adrenal gland
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.65e4
  • 1.65e4
  • 2.49e4
  • 2.58e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007195stroma of bone marrow
  • MmusDv:0000061early adult stage
1.65e4
  • 1.65e4
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:0000061early adult stage
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.66e4
  • 1.66e4
  • 1.81e4
  • 1.94e4
  • 2.55e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000112sexually immature stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.66e4
  • 1.66e4
  • 2.17e4
  • 2.31e4
  • 2.47e4
  • 2.57e4
  • 2.85e4
  • 3.18e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.67e4
  • 1.67e4
  • 2.02e4
  • 2.08e4
  • 2.22e4
  • 2.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
1.70e4
  • 1.70e4
AEIR
  • AEIR
EMAPA:17583spinal cord marginal layer (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.71e4
  • 1.71e4
  • 2.05e4
AEIR
  • AEIR
  • AEIR
EMAPA:28613urothelium of bladder trigone (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.71e4
  • 1.71e4
AEIR
  • AEIR
UBERON:0005130metanephric loop of Henle
  • MmusDv:0000032Theiler stage 23 (mouse)
1.72e4
  • 1.72e4
AEIR
  • AEIR
UBERON:0001597masseter muscle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.77e4
  • 1.77e4
  • 2.07e4
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • MmusDv:0000022Theiler stage 15 (mouse)
1.80e4
  • 1.80e4
AEIR
  • AEIR
UBERON:0001601extra-ocular muscle
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
1.80e4
  • 1.80e4
  • 2.11e4
AEIR
  • AEIR
  • AEIR
CL:0002607migratory enteric neural crest cell
  • MmusDv:0000029Theiler stage 22 (mouse)
1.82e4
  • 1.82e4
AEIR
  • AEIR
UBERON:0002331umbilical cord
  • UBERON:0000104life cycle
1.83e4
  • 1.83e4
AEIR
  • AEIR
EMAPA:18576intermediate grey horn (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.92e4
  • 1.92e4
AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.93e4
  • 1.93e4
  • 2.37e4
  • 2.49e4
  • 2.55e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005151metanephric proximal tubule
  • MmusDv:0000032Theiler stage 23 (mouse)
1.94e4
  • 1.94e4
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000097late adult stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000776 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.97e4
  • 1.97e4
  • 2.01e4
  • 2.02e4
  • 2.13e4
  • 2.17e4
  • 2.20e4
  • 2.23e4
  • 2.39e4
  • 2.66e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
  • 2.43e4
AEIR
  • AEIR
  • AEIR
EMAPA:16541optic vesicle neural ectoderm (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
UBERON:0003373ectoderm of footplate
  • MmusDv:0000026Theiler stage 19 (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
UBERON:0009617head paraxial mesoderm
  • MmusDv:0000021Theiler stage 14 (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
UBERON:0016887entire extraembryonic component
  • MmusDv:0000032Theiler stage 23 (mouse)
2.05e4
  • 2.05e4
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:00000622 month-old stage (mouse)
2.08e4
  • 2.08e4
AEIR
  • AEIR
UBERON:0002370thymus
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
2.11e4
  • 2.11e4
  • 2.40e4
  • 2.48e4
  • 2.49e4
  • 2.95e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
2.17e4
  • 2.17e4
  • 2.50e4
  • 2.56e4
  • 2.58e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
2.20e4
  • 2.20e4
AEIR
  • AEIR
UBERON:0009478associated mesenchyme of midgut
  • MmusDv:0000027Theiler stage 20 (mouse)
2.23e4
  • 2.23e4
AEIR
  • AEIR
UBERON:0002116ileum
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000451 week (mouse)
2.25e4
  • 2.25e4
  • 2.43e4
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
2.36e4
  • 2.36e4
  • 2.47e4
  • 2.48e4
  • 2.49e4
  • 2.66e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.39e4
  • 2.39e4
  • 2.43e4
  • 2.44e4
  • 2.45e4
  • 2.48e4
  • 2.53e4
  • 3.51e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000056ureter
  • MmusDv:0000032Theiler stage 23 (mouse)
2.44e4
  • 2.44e4
AEIR
  • AEIR
UBERON:0005294gonadal ridge
  • MmusDv:0000028Theiler stage 21 (mouse)
2.46e4
  • 2.46e4
AEIR
  • AEIR
UBERON:0001844cochlea
  • MmusDv:00000539 weeks (mouse)
2.49e4
  • 2.49e4
AEIR
  • AEIR
UBERON:0000323late embryo
  • UBERON:0007220late embryonic stage
2.53e4
  • 2.53e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS27893 (CCDS27893.1)
EMBLAK012173, AK078758, BC050838, M35603, X07647, X55318
EnsemblENSMUSG00000036139 (Hoxc9)
MGIMGI:96199 (Hoxc9)
Uniprot/SWISSPROTHXC9_MOUSE, P09633

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