M. musculus Gene: Pkd2l1 - ENSMUSG00000037578 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000037578
NamePkd2l1
Descriptionpolycystic kidney disease 2-like 1 [Source:MGI Symbol;Acc:MGI:1352448]
OrganismMus musculus (mouse)
Synonym(s)b830002b15, bc046386, pcl, pkd2l, pkdl, polycystin-l, q14b55, q14b73, q80zh4, trpp3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007716lumbar subsegment of spinal cord
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000473 weeks (mouse)
2.19e3
  • 2.19e3
  • 1.15e4
94.70739
  • 94.70739
  • 72.23093
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
4.86e3
  • 4.86e3
88.26412
  • 88.26412
AEIR
  • AEIR
UBERON:0001343seminiferous tubule of testis
  • MmusDv:00000622 month-old stage (mouse)
9.55e3
  • 9.55e3
76.93720
  • 76.93720
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:00000473 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000451 week (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:0000025Theiler stage 18 (mouse)
9.63e3
  • 9.63e3
  • 9.90e3
  • 1.02e4
  • 1.08e4
  • 1.18e4
  • 1.20e4
  • 1.21e4
  • 1.22e4
  • 1.59e4
  • 1.69e4
  • 1.71e4
  • 1.73e4
  • 1.75e4
  • 1.82e4
  • 1.86e4
  • 1.92e4
  • 1.93e4
  • 1.97e4
76.76099
  • 76.76099
  • 76.09442
  • 75.32409
  • 73.84061
  • 71.49384
  • 71.10333
  • 70.75567
  • 70.59923
  • 61.60722
  • 59.23957
  • 58.79112
  • 58.20802
  • 57.74462
  • 56.15874
  • 55.08114
  • 53.75809
  • 53.41383
  • 52.51016
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
1.00e4
  • 1.00e4
  • 1.42e4
  • 1.68e4
  • 1.82e4
75.86835
  • 75.86835
  • 65.68059
  • 59.43392
  • 56.02801
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000396vallate papilla
  • UBERON:0000112sexually immature stage
1.04e4
  • 1.04e4
75.00000
  • 75.00000
AEIR
  • AEIR
EMAPA:18576intermediate grey horn (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.10e4
  • 1.10e4
73.32610
  • 73.32610
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.34e4
  • 1.34e4
67.76564
  • 67.76564
AEIR
  • AEIR
UBERON:0002257ventral horn of spinal cord
  • MmusDv:00001134-7 days (mouse)
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
  • 1.54e4
67.66055
  • 67.66055
  • 62.88056
AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
67.12699
  • 67.12699
AEIR
  • AEIR
UBERON:0000358blastocyst
  • UBERON:0000108blastula stage
  • MmusDv:0000008Theiler stage 04 (mouse)
1.42e4
  • 1.42e4
  • 1.93e4
65.81159
  • 65.81159
  • 53.37047
AEIR
  • AEIR
  • AEIR
UBERON:0003243epithelium of cochlear duct
  • UBERON:0007221neonate stage
1.43e4
  • 1.43e4
65.52277
  • 65.52277
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000776 month-old stage (mouse)
1.45e4
  • 1.45e4
  • 1.61e4
  • 1.82e4
  • 1.97e4
  • 2.15e4
  • 2.43e4
  • 2.51e4
  • 2.52e4
  • 2.53e4
  • 2.53e4
64.87622
  • 64.87622
  • 61.20459
  • 55.98841
  • 52.34063
  • 48.07854
  • 41.38851
  • 39.40164
  • 39.07808
  • 38.98740
  • 38.95379
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.49e4
  • 1.49e4
64.07892
  • 64.07892
AEIR
  • AEIR
UBERON:0005294gonadal ridge
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
1.49e4
  • 1.49e4
  • 1.49e4
64.07144
  • 64.07144
  • 63.94725
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000495 weeks (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000068embryo stage
1.56e4
  • 1.56e4
  • 1.67e4
  • 1.78e4
  • 1.83e4
  • 1.91e4
  • 1.94e4
  • 1.97e4
  • 1.98e4
  • 2.46e4
  • 2.46e4
  • 2.49e4
  • 2.49e4
  • 2.54e4
  • 2.55e4
62.44085
  • 62.44085
  • 59.72624
  • 56.97125
  • 55.75879
  • 53.95311
  • 53.16854
  • 52.41253
  • 52.30773
  • 40.66521
  • 40.65589
  • 39.97581
  • 39.80879
  • 38.57327
  • 38.46480
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 2.30e4
  • 2.42e4
  • 2.43e4
  • 2.50e4
  • 2.63e4
62.01149
  • 62.01149
  • 44.42388
  • 41.46268
  • 41.39978
  • 39.74271
  • 36.52574
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
61.09288
  • 61.09288
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000644 month-old stage (mouse)
1.68e4
  • 1.68e4
  • 1.82e4
  • 2.01e4
  • 2.09e4
59.33807
  • 59.33807
  • 56.01188
  • 51.44804
  • 49.49983
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
59.04375
  • 59.04375
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
  • 1.85e4
  • 1.97e4
57.97706
  • 57.97706
  • 55.24505
  • 52.35922
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.83e4
  • 1.83e4
  • 2.95e4
55.71630
  • 55.71630
  • 28.83452
AEIR
  • AEIR
  • AEIR
UBERON:0002435striatum
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000097late adult stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.86e4
  • 1.86e4
  • 2.09e4
  • 2.12e4
  • 2.44e4
  • 2.47e4
  • 2.49e4
55.12429
  • 55.12429
  • 49.54551
  • 48.90442
  • 41.00198
  • 40.37610
  • 39.87269
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.90e4
  • 1.90e4
54.08783
  • 54.08783
AEIR
  • AEIR
UBERON:0002038substantia nigra
  • MmusDv:0000075middle aged stage (mouse)
1.90e4
  • 1.90e4
54.08090
  • 54.08090
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.92e4
  • 1.92e4
  • 2.06e4
  • 2.08e4
  • 2.25e4
  • 2.38e4
  • 2.39e4
  • 2.53e4
53.68044
  • 53.68044
  • 50.38368
  • 49.90171
  • 45.64382
  • 42.52868
  • 42.32549
  • 38.97125
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001844cochlea
  • UBERON:0007221neonate stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000539 weeks (mouse)
1.94e4
  • 1.94e4
  • 2.46e4
  • 2.50e4
53.25555
  • 53.25555
  • 40.69353
  • 39.55285
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.94e4
  • 1.94e4
  • 1.96e4
  • 2.14e4
53.16852
  • 53.16852
  • 52.57948
  • 48.30014
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
1.95e4
  • 1.95e4
  • 2.19e4
53.04372
  • 53.04372
  • 47.16523
AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
1.95e4
  • 1.95e4
  • 2.32e4
52.95961
  • 52.95961
  • 43.90633
AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.97e4
  • 1.97e4
52.52274
  • 52.52274
AEIR
  • AEIR
UBERON:0002450decidua
  • MmusDv:0000020Theiler stage 13 (mouse)
  • MmusDv:0000021Theiler stage 14 (mouse)
2.01e4
  • 2.01e4
  • 2.43e4
51.36538
  • 51.36538
  • 41.22950
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • MmusDv:0000006Theiler stage 03 (mouse)
  • MmusDv:0000005Theiler stage 02 (mouse)
2.08e4
  • 2.08e4
  • 2.29e4
49.86866
  • 49.86866
  • 44.75809
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
2.18e4
  • 2.18e4
  • 2.30e4
  • 2.35e4
  • 2.58e4
  • 3.09e4
47.25468
  • 47.25468
  • 44.37248
  • 43.28996
  • 37.73853
  • 25.52042
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
2.23e4
  • 2.23e4
  • 2.24e4
  • 2.51e4
  • 2.54e4
  • 2.77e4
46.06876
  • 46.06876
  • 45.81026
  • 39.50867
  • 38.73788
  • 33.05891
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001474bone element
  • MmusDv:00000622 month-old stage (mouse)
2.28e4
  • 2.28e4
44.92636
  • 44.92636
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
2.35e4
  • 2.35e4
  • 2.42e4
  • 2.51e4
  • 2.58e4
43.36825
  • 43.36825
  • 41.65968
  • 39.33573
  • 37.76231
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.35e4
  • 2.35e4
43.23713
  • 43.23713
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
2.35e4
  • 2.35e4
  • 2.39e4
  • 2.50e4
  • 2.75e4
43.14976
  • 43.14976
  • 42.24418
  • 39.59232
  • 33.50806
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.38e4
  • 2.38e4
  • 2.40e4
  • 2.44e4
42.44169
  • 42.44169
  • 42.04940
  • 41.10041
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002308nucleus of brain
  • MmusDv:0000061early adult stage
2.43e4
  • 2.43e4
41.27424
  • 41.27424
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0000104life cycle
2.46e4
  • 2.46e4
40.72670
  • 40.72670
AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.49e4
  • 2.49e4
  • 2.51e4
  • 2.54e4
  • 2.56e4
  • 2.56e4
40.00447
  • 40.00447
  • 39.29783
  • 38.72141
  • 38.24928
  • 38.16760
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.49e4
  • 2.49e4
  • 2.58e4
39.90324
  • 39.90324
  • 37.75592
AEIR
  • AEIR
  • AEIR
UBERON:0001950neocortex
  • MmusDv:0000076aged adult stage (mouse)
2.49e4
  • 2.49e4
39.82846
  • 39.82846
AEIR
  • AEIR
UBERON:0002108small intestine
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.50e4
  • 2.50e4
  • 2.58e4
39.56902
  • 39.56902
  • 37.66869
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.51e4
  • 2.51e4
39.31478
  • 39.31478
AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000024Theiler stage 17 (mouse)
2.54e4
  • 2.54e4
38.64906
  • 38.64906
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.55e4
  • 2.55e4
38.48240
  • 38.48240
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
2.58e4
  • 2.58e4
37.80864
  • 37.80864
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.82e4
  • 2.82e4
31.86082
  • 31.86082
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS29846 (CCDS29846.1)
EMBLAB290927, AC125101, AF271381, BC116297, BC116323
EnsemblENSMUSG00000037578 (Pkd2l1)
MGIMGI:1352448 (Pkd2l1)
Uniprot/SWISSPROTA2A259, PK2L1_MOUSE

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