M. musculus Gene: Pkhd1l1 - ENSMUSG00000038725 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000038725
NamePkhd1l1
Descriptionpolycystic kidney and hepatic disease 1-like 1 [Source:MGI Symbol;Acc:MGI:2183153]
OrganismMus musculus (mouse)
Synonym(s)ab055648, d86 mrna, fibrocystin l, pkhdl1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
EMAPA:28533male associated reproductive structure (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
4.60e3
  • 4.60e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0000178blood
  • MmusDv:0000027Theiler stage 20 (mouse)
  • UBERON:0000104life cycle
5.64e3
  • 5.64e3
  • 2.49e4
86.39
  • 86.39
  • 39.95
AEIR
  • AEIR
  • AEIR
UBERON:0012238ureteric bud trunk
  • MmusDv:0000032Theiler stage 23 (mouse)
6.37e3
  • 6.37e3
84.61
  • 84.61
AEIR
  • AEIR
UBERON:0005215kidney interstitium
  • MmusDv:0000032Theiler stage 23 (mouse)
6.91e3
  • 6.91e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0005107metanephric cap
  • MmusDv:0000032Theiler stage 23 (mouse)
7.25e3
  • 7.25e3
82.49
  • 82.49
AEIR
  • AEIR
EMAPA:28500early tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
7.31e3
  • 7.31e3
82.35
  • 82.35
AEIR
  • AEIR
EMAPA:28527late tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
8.29e3
  • 8.29e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0003517kidney blood vessel
  • MmusDv:0000032Theiler stage 23 (mouse)
8.29e3
  • 8.29e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001333male urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
8.63e3
  • 8.63e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0001255urinary bladder
  • MmusDv:0000032Theiler stage 23 (mouse)
8.63e3
  • 8.63e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000061early adult stage
9.18e3
  • 9.18e3
  • 2.24e4
  • 2.50e4
77.83
  • 77.83
  • 46.00
  • 39.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
9.39e3
  • 9.39e3
  • 2.29e4
  • 2.38e4
  • 2.44e4
  • 2.63e4
  • 2.64e4
77.34
  • 77.34
  • 44.66
  • 42.55
  • 40.98
  • 36.50
  • 36.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
9.57e3
  • 9.57e3
  • 2.26e4
  • 2.42e4
  • 2.45e4
  • 2.47e4
  • 2.49e4
  • 2.50e4
  • 2.50e4
  • 2.55e4
  • 2.55e4
76.90
  • 76.90
  • 45.53
  • 41.65
  • 40.87
  • 40.27
  • 39.83
  • 39.75
  • 39.54
  • 38.48
  • 38.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003134female reproductive organ
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001334female urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
1.12e4
  • 1.12e4
73.07
  • 73.07
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
1.20e4
  • 1.20e4
  • 1.45e4
  • 1.80e4
  • 2.31e4
  • 2.51e4
71.04
  • 71.04
  • 64.99
  • 56.57
  • 44.31
  • 39.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002137aortic valve
  • MmusDv:00000484 weeks (mouse)
1.33e4
  • 1.33e4
67.97
  • 67.97
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000027Theiler stage 20 (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
1.36e4
  • 1.36e4
  • 1.45e4
  • 1.80e4
  • 2.45e4
  • 2.57e4
  • 2.58e4
67.26
  • 67.26
  • 65.03
  • 56.53
  • 40.90
  • 37.92
  • 37.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.39e4
  • 1.39e4
  • 1.58e4
66.35
  • 66.35
  • 61.75
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.40e4
  • 1.40e4
  • 1.63e4
  • 1.68e4
66.17
  • 66.17
  • 60.54
  • 59.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001496ascending aorta
  • MmusDv:00000484 weeks (mouse)
1.41e4
  • 1.41e4
66.07
  • 66.07
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.41e4
  • 1.41e4
  • 1.48e4
  • 1.77e4
  • 2.12e4
65.95
  • 65.95
  • 64.20
  • 57.35
  • 48.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
65.46
  • 65.46
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
64.24
  • 64.24
AEIR
  • AEIR
UBERON:0002370thymus
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0007221neonate stage
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.52e4
  • 1.67e4
  • 1.97e4
  • 2.50e4
  • 2.87e4
63.67
  • 63.67
  • 63.38
  • 59.75
  • 52.34
  • 39.59
  • 30.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.52e4
  • 1.52e4
63.41
  • 63.41
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.52e4
  • 1.52e4
63.32
  • 63.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:0000097late adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.56e4
  • 1.56e4
  • 1.90e4
  • 2.37e4
  • 2.50e4
  • 2.50e4
  • 2.57e4
62.35
  • 62.35
  • 54.04
  • 42.88
  • 39.59
  • 39.55
  • 37.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
1.74e4
  • 1.74e4
58.07
  • 58.07
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.79e4
  • 1.79e4
56.80
  • 56.80
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.84e4
  • 1.84e4
  • 1.84e4
  • 2.23e4
  • 2.33e4
  • 2.35e4
  • 2.43e4
  • 2.44e4
  • 2.89e4
55.69
  • 55.69
  • 55.50
  • 46.15
  • 43.84
  • 43.23
  • 41.31
  • 41.17
  • 30.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.87e4
  • 1.87e4
54.89
  • 54.89
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.88e4
  • 1.88e4
  • 2.60e4
54.68
  • 54.68
  • 37.24
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.96e4
  • 1.96e4
52.69
  • 52.69
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.97e4
  • 1.97e4
  • 2.66e4
52.34
  • 52.34
  • 35.79
AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.07e4
  • 2.07e4
50.13
  • 50.13
AEIR
  • AEIR
UBERON:0001017central nervous system
  • MmusDv:0000025Theiler stage 18 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • UBERON:0007221neonate stage
2.07e4
  • 2.07e4
  • 2.07e4
  • 2.60e4
50.00
  • 50.00
  • 50.00
  • 37.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
2.08e4
  • 2.08e4
49.76
  • 49.76
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.09e4
  • 2.09e4
49.56
  • 49.56
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:000005410 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:00000539 weeks (mouse)
2.09e4
  • 2.09e4
  • 2.10e4
  • 2.35e4
  • 2.53e4
  • 2.53e4
  • 2.53e4
  • 2.54e4
  • 2.55e4
  • 2.55e4
  • 2.55e4
49.43
  • 49.43
  • 49.19
  • 43.16
  • 38.98
  • 38.91
  • 38.85
  • 38.57
  • 38.48
  • 38.45
  • 38.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.12e4
  • 2.12e4
48.74
  • 48.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.13e4
  • 2.13e4
  • 2.27e4
48.51
  • 48.51
  • 45.28
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000104life cycle
2.14e4
  • 2.14e4
48.45
  • 48.45
AEIR
  • AEIR
UBERON:0002081cardiac atrium
  • MmusDv:0000027Theiler stage 20 (mouse)
2.16e4
  • 2.16e4
47.75
  • 47.75
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.18e4
  • 2.18e4
  • 2.49e4
47.34
  • 47.34
  • 39.90
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.18e4
  • 2.18e4
47.26
  • 47.26
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.20e4
  • 2.20e4
46.91
  • 46.91
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.23e4
  • 2.23e4
46.10
  • 46.10
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.33e4
  • 2.33e4
43.74
  • 43.74
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.34e4
  • 2.34e4
  • 2.77e4
43.59
  • 43.59
  • 33.15
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.36e4
  • 2.36e4
42.98
  • 42.98
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.36e4
  • 2.36e4
  • 2.41e4
  • 2.44e4
  • 2.52e4
  • 2.53e4
  • 2.56e4
42.98
  • 42.98
  • 41.80
  • 41.11
  • 39.20
  • 38.97
  • 38.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001885dentate gyrus of hippocampal formation
  • MmusDv:0000061early adult stage
2.44e4
  • 2.44e4
41.07
  • 41.07
AEIR
  • AEIR
UBERON:0000081metanephros
  • MmusDv:0000028Theiler stage 21 (mouse)
2.45e4
  • 2.45e4
40.85
  • 40.85
AEIR
  • AEIR
UBERON:0001890forebrain
  • UBERON:0007221neonate stage
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
2.46e4
  • 2.46e4
  • 2.47e4
  • 2.47e4
40.70
  • 40.70
  • 40.30
  • 40.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000056ureter
  • MmusDv:0000032Theiler stage 23 (mouse)
2.46e4
  • 2.46e4
40.63
  • 40.63
AEIR
  • AEIR
UBERON:0006364ureteric bud tip
  • MmusDv:0000032Theiler stage 23 (mouse)
2.48e4
  • 2.48e4
40.14
  • 40.14
AEIR
  • AEIR
UBERON:0002133atrioventricular valve
  • MmusDv:0000034Theiler stage 25 (mouse)
2.51e4
  • 2.51e4
39.52
  • 39.52
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0007221neonate stage
2.61e4
  • 2.61e4
36.94
  • 36.94
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.63e4
  • 2.63e4
36.53
  • 36.53
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
2.71e4
  • 2.71e4
34.55
  • 34.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAC127312, AC128736
EnsemblENSMUSG00000038725 (Pkhd1l1)
MGIMGI:2183153 (Pkhd1l1)
Uniprot/SPTREMBLE9PUU8, E9PUU8_MOUSE, F8WH29, F8WH29_MOUSE

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