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M. musculus Gene: Lrrc29 - ENSMUSG00000041679 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000041679
NameLrrc29
Descriptionleucine rich repeat containing 29 [Source:MGI Symbol;Acc:MGI:2443262]
OrganismMus musculus (mouse)
Synonym(s)a630024j02rik, fbl9, fbxl9
Orthologs(s)8 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
2.37e3
  • 2.37e3
94.31
  • 94.31
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
2.83e3
  • 2.83e3
93.22
  • 93.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
4.00e3
  • 4.00e3
  • 4.89e3
  • 5.16e3
  • 6.20e3
90.40
  • 90.40
  • 88.28
  • 87.62
  • 85.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
5.27e3
  • 5.27e3
  • 9.67e3
87.36
  • 87.36
  • 76.81
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
5.95e3
  • 5.95e3
  • 6.52e3
  • 6.75e3
  • 7.26e3
  • 9.27e3
  • 1.08e4
  • 1.14e4
  • 1.31e4
  • 1.40e4
  • 1.51e4
85.71
  • 85.71
  • 84.37
  • 83.81
  • 82.57
  • 77.77
  • 74.20
  • 72.62
  • 68.63
  • 66.52
  • 63.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
8.67e3
  • 8.67e3
79.20
  • 79.20
AEIR
  • AEIR
CL:0000094granulocyte
  • MmusDv:00000622 month-old stage (mouse)
9.64e3
  • 9.64e3
76.87
  • 76.87
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000112sexually immature stage
1.03e4
  • 1.03e4
  • 1.27e4
  • 1.34e4
  • 1.44e4
75.28
  • 75.28
  • 69.57
  • 67.80
  • 65.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000034Theiler stage 25 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
1.13e4
  • 1.13e4
  • 1.34e4
  • 1.53e4
  • 1.71e4
  • 2.10e4
72.99
  • 72.99
  • 67.91
  • 63.22
  • 59.04
  • 49.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
72.14
  • 72.14
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
1.17e4
  • 1.17e4
71.90
  • 71.90
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007221neonate stage
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
  • 1.41e4
  • 1.43e4
  • 1.45e4
  • 1.45e4
  • 1.59e4
  • 1.60e4
  • 1.62e4
  • 1.65e4
  • 1.69e4
71.74
  • 71.74
  • 66.27
  • 65.62
  • 65.27
  • 65.13
  • 61.82
  • 61.66
  • 61.24
  • 60.47
  • 59.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
  • 1.49e4
  • 1.56e4
71.66
  • 71.66
  • 64.31
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
71.20
  • 71.20
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
71.19
  • 71.19
AEIR
  • AEIR
UBERON:0001347white adipose tissue
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000451 week (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.22e4
  • 1.22e4
  • 1.29e4
  • 1.36e4
  • 1.43e4
  • 1.61e4
70.70
  • 70.70
  • 69.01
  • 67.35
  • 65.65
  • 61.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.23e4
  • 1.23e4
  • 1.44e4
  • 1.52e4
70.37
  • 70.37
  • 65.55
  • 63.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
  • 1.51e4
  • 1.69e4
70.29
  • 70.29
  • 63.73
  • 59.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.28e4
  • 1.28e4
  • 1.45e4
  • 1.46e4
  • 1.46e4
69.36
  • 69.36
  • 65.28
  • 64.96
  • 64.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000528 weeks (mouse)
1.31e4
  • 1.31e4
  • 1.35e4
  • 1.40e4
  • 1.42e4
  • 1.64e4
68.55
  • 68.55
  • 67.57
  • 66.40
  • 65.99
  • 60.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
1.32e4
  • 1.32e4
  • 1.41e4
  • 3.30e4
68.39
  • 68.39
  • 66.24
  • 20.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
  • 1.46e4
67.73
  • 67.73
  • 65.08
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000066fully formed stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
1.36e4
  • 1.36e4
  • 1.51e4
  • 1.52e4
  • 1.65e4
67.33
  • 67.33
  • 63.74
  • 63.48
  • 60.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.37e4
  • 1.37e4
  • 1.83e4
  • 1.92e4
67.01
  • 67.01
  • 56.12
  • 54.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
66.89
  • 66.89
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
  • 1.48e4
66.82
  • 66.82
  • 64.49
AEIR
  • AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.39e4
  • 1.39e4
  • 1.42e4
  • 1.50e4
  • 1.59e4
66.70
  • 66.70
  • 65.91
  • 64.07
  • 61.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • UBERON:0007221neonate stage
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.39e4
  • 1.39e4
  • 1.53e4
  • 1.59e4
  • 1.63e4
  • 1.69e4
  • 1.75e4
66.56
  • 66.56
  • 63.36
  • 61.88
  • 60.85
  • 59.56
  • 57.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
66.41
  • 66.41
AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.41e4
  • 1.41e4
  • 1.41e4
66.27
  • 66.27
  • 66.11
AEIR
  • AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.41e4
  • 1.41e4
66.19
  • 66.19
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
65.99
  • 65.99
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
65.77
  • 65.77
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
65.70
  • 65.70
AEIR
  • AEIR
UBERON:0001040yolk sac
  • MmusDv:0000023Theiler stage 16 (mouse)
1.43e4
  • 1.43e4
65.65
  • 65.65
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
65.57
  • 65.57
AEIR
  • AEIR
UBERON:0001890forebrain
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.44e4
  • 1.44e4
  • 1.60e4
  • 1.62e4
  • 1.67e4
  • 1.67e4
  • 1.77e4
65.39
  • 65.39
  • 61.52
  • 61.19
  • 60.01
  • 59.81
  • 57.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
65.23
  • 65.23
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.45e4
  • 1.45e4
  • 1.48e4
  • 1.54e4
65.17
  • 65.17
  • 64.44
  • 63.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
1.45e4
  • 1.45e4
65.16
  • 65.16
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.46e4
  • 1.46e4
  • 1.48e4
  • 1.49e4
  • 1.50e4
64.97
  • 64.97
  • 64.43
  • 64.28
  • 63.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.46e4
  • 1.46e4
  • 1.54e4
  • 1.58e4
  • 1.61e4
  • 1.67e4
  • 1.68e4
64.85
  • 64.85
  • 63.11
  • 62.17
  • 61.38
  • 59.99
  • 59.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.47e4
  • 1.47e4
  • 1.55e4
  • 1.56e4
  • 1.57e4
64.69
  • 64.69
  • 62.83
  • 62.54
  • 62.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
1.47e4
  • 1.47e4
64.62
  • 64.62
AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
64.56
  • 64.56
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.50e4
  • 1.50e4
64.01
  • 64.01
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.51e4
  • 1.51e4
  • 1.52e4
  • 1.57e4
63.84
  • 63.84
  • 63.55
  • 62.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.52e4
  • 1.52e4
  • 1.59e4
  • 1.71e4
63.58
  • 63.58
  • 61.90
  • 58.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
1.52e4
  • 1.52e4
63.44
  • 63.44
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
63.31
  • 63.31
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
1.53e4
  • 1.53e4
63.19
  • 63.19
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
62.42
  • 62.42
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.58e4
  • 1.58e4
62.11
  • 62.11
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
61.74
  • 61.74
AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
1.60e4
  • 1.60e4
61.66
  • 61.66
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
61.43
  • 61.43
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.61e4
  • 1.61e4
  • 1.65e4
61.38
  • 61.38
  • 60.40
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.61e4
  • 1.61e4
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
61.00
  • 61.00
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.64e4
  • 1.64e4
60.69
  • 60.69
AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.64e4
  • 1.64e4
60.63
  • 60.63
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
59.81
  • 59.81
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
  • 1.78e4
59.52
  • 59.52
  • 57.35
AEIR
  • AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.72e4
  • 1.72e4
58.73
  • 58.73
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
1.74e4
  • 1.74e4
58.28
  • 58.28
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
1.75e4
  • 1.75e4
58.12
  • 58.12
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
2.18e4
  • 2.18e4
47.66
  • 47.66
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires1 species1 geneCompare expression
Boreoeutheria5 species5 genesCompare expression
Mammalia6 species6 genesCompare expression
Amniota7 species7 genesCompare expression
Euteleostomi8 species8 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000041679.

Cross-references

CCDSCCDS57641 (CCDS57641.1)
EnsemblENSMUSG00000041679 (Lrrc29)
MGIMGI:2443262 (Lrrc29)
EMBLAC124584
Uniprot/SPTREMBLF6SF53, F6SF53_MOUSE

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