M. musculus Gene: Ptx4 - ENSMUSG00000044172 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000044172
NamePtx4
Descriptionpentraxin 4 [Source:MGI Symbol;Acc:MGI:1915759]
OrganismMus musculus (mouse)
Synonym(s)1110018h23rik
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000451 week (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
9.47e3
  • 9.47e3
  • 1.33e4
  • 1.60e4
  • 1.82e4
  • 1.85e4
77.29
  • 77.29
  • 68.20
  • 61.72
  • 56.30
  • 55.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011907gastrocnemius medialis
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.33e4
74.52
  • 74.52
  • 73.71
  • 68.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
1.13e4
  • 1.13e4
  • 2.07e4
  • 2.09e4
  • 2.21e4
  • 2.25e4
  • 2.39e4
  • 2.48e4
  • 2.48e4
  • 2.59e4
  • 2.74e4
72.96
  • 72.96
  • 50.44
  • 49.81
  • 46.98
  • 46.09
  • 42.63
  • 40.58
  • 40.57
  • 37.76
  • 34.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.20e4
  • 1.20e4
  • 1.63e4
  • 2.03e4
  • 2.89e4
71.30
  • 71.30
  • 60.90
  • 51.34
  • 30.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000066fully formed stage
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
1.22e4
  • 1.22e4
  • 1.55e4
  • 1.60e4
  • 2.17e4
  • 2.29e4
70.73
  • 70.73
  • 62.90
  • 61.54
  • 47.94
  • 45.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000066fully formed stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.28e4
  • 1.28e4
  • 2.21e4
  • 2.48e4
69.31
  • 69.31
  • 47.07
  • 40.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
1.35e4
  • 1.35e4
  • 1.47e4
  • 2.63e4
67.71
  • 67.71
  • 64.66
  • 36.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001389soleus muscle
  • MmusDv:00000484 weeks (mouse)
1.44e4
  • 1.44e4
65.55
  • 65.55
AEIR
  • AEIR
UBERON:0006862diaphysis of femur
  • MmusDv:00000495 weeks (mouse)
1.48e4
  • 1.48e4
64.39
  • 64.39
AEIR
  • AEIR
UBERON:0001665triceps surae
  • MmusDv:00000495 weeks (mouse)
1.52e4
  • 1.52e4
63.63
  • 63.63
AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.55e4
  • 1.55e4
  • 1.87e4
  • 1.95e4
62.87
  • 62.87
  • 55.21
  • 53.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004454tarsal region
  • MmusDv:00000506 weeks (mouse)
1.56e4
  • 1.56e4
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
62.07
  • 62.07
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000066fully formed stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
  • 2.06e4
  • 2.09e4
  • 2.47e4
  • 2.49e4
  • 2.54e4
  • 2.55e4
  • 2.57e4
61.35
  • 61.35
  • 50.46
  • 49.91
  • 40.77
  • 40.19
  • 39.08
  • 38.87
  • 38.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
60.49
  • 60.49
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.66e4
  • 1.66e4
60.22
  • 60.22
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0007221neonate stage
  • MmusDv:00000484 weeks (mouse)
  • UBERON:0000104life cycle
  • MmusDv:00000506 weeks (mouse)
1.68e4
  • 1.68e4
  • 1.83e4
  • 2.47e4
  • 2.51e4
59.73
  • 59.73
  • 56.03
  • 40.84
  • 39.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000964cornea
  • UBERON:0000104life cycle
1.70e4
  • 1.70e4
59.10
  • 59.10
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000104life cycle
1.71e4
  • 1.71e4
  • 2.56e4
  • 2.58e4
  • 2.74e4
59.06
  • 59.06
  • 38.66
  • 38.16
  • 34.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000982skeletal joint
  • UBERON:0000104life cycle
1.75e4
  • 1.75e4
58.10
  • 58.10
AEIR
  • AEIR
UBERON:0001388gastrocnemius
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000075middle aged stage (mouse)
  • MmusDv:0000097late adult stage
1.80e4
  • 1.80e4
  • 1.95e4
  • 2.48e4
56.72
  • 56.72
  • 53.19
  • 40.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
  • 2.39e4
  • 2.40e4
  • 2.51e4
  • 3.09e4
55.68
  • 55.68
  • 42.62
  • 42.44
  • 39.70
  • 25.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001347white adipose tissue
  • UBERON:0000066fully formed stage
1.87e4
  • 1.87e4
55.05
  • 55.05
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.91e4
  • 1.91e4
54.18
  • 54.18
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
1.98e4
  • 1.98e4
52.52
  • 52.52
AEIR
  • AEIR
UBERON:0000945stomach
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
  • 2.19e4
  • 2.35e4
  • 2.78e4
52.34
  • 52.34
  • 47.54
  • 43.61
  • 33.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
52.23
  • 52.23
AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:0000034Theiler stage 25 (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000104life cycle
  • UBERON:0007221neonate stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
2.01e4
  • 2.01e4
  • 2.24e4
  • 2.24e4
  • 2.49e4
  • 2.51e4
  • 2.51e4
  • 2.51e4
  • 2.53e4
  • 2.54e4
  • 2.56e4
  • 2.56e4
  • 2.56e4
51.84
  • 51.84
  • 46.36
  • 46.14
  • 40.32
  • 39.86
  • 39.66
  • 39.65
  • 39.31
  • 39.00
  • 38.69
  • 38.59
  • 38.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010307conjunctival fornix
  • MmusDv:00000451 week (mouse)
2.07e4
  • 2.07e4
50.32
  • 50.32
AEIR
  • AEIR
UBERON:0007769medial preoptic region
  • MmusDv:0000061early adult stage
2.08e4
  • 2.08e4
50.16
  • 50.16
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.10e4
  • 2.10e4
49.70
  • 49.70
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.18e4
  • 2.18e4
47.80
  • 47.80
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.23e4
  • 2.23e4
  • 2.28e4
46.59
  • 46.59
  • 45.34
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:00000462 weeks (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
2.23e4
  • 2.23e4
  • 2.39e4
  • 2.46e4
  • 2.62e4
  • 2.66e4
46.46
  • 46.46
  • 42.56
  • 40.98
  • 37.10
  • 36.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0007221neonate stage
2.27e4
  • 2.27e4
  • 2.52e4
  • 2.59e4
  • 2.66e4
45.55
  • 45.55
  • 39.48
  • 37.80
  • 36.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.27e4
  • 2.27e4
  • 2.48e4
45.55
  • 45.55
  • 40.49
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000028Theiler stage 21 (mouse)
2.29e4
  • 2.29e4
  • 2.47e4
  • 2.70e4
45.10
  • 45.10
  • 40.81
  • 35.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000104life cycle
2.29e4
  • 2.29e4
  • 2.42e4
45.04
  • 45.04
  • 41.81
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0007221neonate stage
2.35e4
  • 2.35e4
  • 2.94e4
43.61
  • 43.61
  • 29.46
AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.37e4
  • 2.37e4
43.22
  • 43.22
AEIR
  • AEIR
UBERON:0004134proximal tubule
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
2.40e4
  • 2.40e4
  • 2.49e4
42.48
  • 42.48
  • 40.21
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.41e4
  • 2.41e4
  • 2.52e4
  • 2.57e4
42.12
  • 42.12
  • 39.41
  • 38.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.42e4
  • 2.42e4
41.99
  • 41.99
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
2.43e4
  • 2.43e4
  • 3.17e4
41.58
  • 41.58
  • 23.89
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • UBERON:0007221neonate stage
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.45e4
  • 2.45e4
  • 2.82e4
  • 2.96e4
41.14
  • 41.14
  • 32.42
  • 28.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.49e4
  • 2.49e4
  • 2.84e4
40.14
  • 40.14
  • 31.82
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.50e4
  • 2.50e4
  • 2.56e4
40.01
  • 40.01
  • 38.53
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000104life cycle
2.50e4
  • 2.50e4
  • 2.56e4
39.96
  • 39.96
  • 38.58
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
2.60e4
  • 2.60e4
37.71
  • 37.71
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
2.65e4
  • 2.65e4
  • 2.75e4
  • 2.93e4
36.36
  • 36.36
  • 34.03
  • 29.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000033Theiler stage 24 (mouse)
2.88e4
  • 2.88e4
30.85
  • 30.85
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.97e4
  • 2.97e4
28.65
  • 28.65
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
3.37e4
  • 3.37e4
19.13
  • 19.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000044172.

Cross-references

CCDSCCDS50031 (CCDS50031.1)
EnsemblENSMUSG00000044172 (Ptx4)
MGIMGI:1915759 (Ptx4)
EMBLAC130711
Uniprot/SPTREMBLE9QNW3, E9QNW3_MOUSE

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