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M. musculus Gene: Hoxc12 - ENSMUSG00000050328 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000050328
NameHoxc12
Descriptionhomeobox C12 [Source:MGI Symbol;Acc:MGI:96194]
OrganismMus musculus (mouse)
Synonym(s)hox-3.8, hoxc-12
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.91e3
  • 1.91e3
  • 1.25e4
95.43
  • 95.43
  • 70.00
AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
8.52e3
  • 8.52e3
  • 1.06e4
  • 1.24e4
79.56
  • 79.56
  • 74.65
  • 70.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
8.65e3
  • 8.65e3
  • 9.13e3
79.25
  • 79.25
  • 78.10
AEIR
  • AEIR
  • AEIR
UBERON:0007830pelvic girdle bone/zone
  • MmusDv:0000028Theiler stage 21 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005256trunk mesenchyme
  • MmusDv:0000028Theiler stage 21 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002103hindlimb
  • MmusDv:0000028Theiler stage 21 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.23e4
  • 1.23e4
  • 1.61e4
  • 1.96e4
70.52
  • 70.52
  • 61.47
  • 53.00
AEIR
  • AEIR
  • AEIR
  • AEIR
EMAPA:17246handplate ectoderm (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.25e4
  • 1.25e4
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0002240spinal cord
  • MmusDv:0000028Theiler stage 21 (mouse)
1.25e4
  • 1.25e4
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.25e4
  • 1.25e4
  • 1.30e4
  • 1.47e4
  • 1.80e4
69.94
  • 69.94
  • 68.70
  • 64.61
  • 56.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
  • 3.42e4
  • 3.47e4
  • 3.57e4
66.56
  • 66.56
  • 17.94
  • 16.82
  • 14.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.40e4
  • 1.40e4
  • 2.50e4
  • 2.51e4
  • 2.63e4
66.30
  • 66.30
  • 40.04
  • 39.80
  • 37.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009749limb mesenchyme
  • MmusDv:0000026Theiler stage 19 (mouse)
1.49e4
  • 1.49e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0003599tail connective tissue
  • MmusDv:0000028Theiler stage 21 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
EMAPA:17700tail spinal cord (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003373ectoderm of footplate
  • MmusDv:0000026Theiler stage 19 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0015252coat hair follicle
  • UBERON:0000112sexually immature stage
  • UBERON:0007221neonate stage
2.08e4
  • 2.08e4
  • 2.08e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0009583spinal cord mantle layer
  • MmusDv:0000028Theiler stage 21 (mouse)
2.08e4
  • 2.08e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
2.22e4
  • 2.22e4
46.63
  • 46.63
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0000066fully formed stage
2.42e4
  • 2.42e4
42.00
  • 42.00
AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000032Theiler stage 23 (mouse)
2.45e4
  • 2.45e4
41.11
  • 41.11
AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
2.64e4
  • 2.64e4
36.62
  • 36.62
AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.65e4
  • 2.65e4
36.35
  • 36.35
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000066fully formed stage
2.84e4
  • 2.84e4
  • 2.86e4
  • 3.46e4
31.83
  • 31.83
  • 31.34
  • 17.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.91e4
  • 2.91e4
  • 3.71e4
  • 3.78e4
30.13
  • 30.13
  • 10.93
  • 9.24
AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000050328.

Cross-references

CCDSCCDS27891 (CCDS27891.1)
EnsemblENSMUSG00000050328 (Hoxc12)
MGIMGI:96194 (Hoxc12)
EMBLAF448482, BC120845, BC120847
Uniprot/SWISSPROTHXC12_MOUSE, Q8K5B8

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