M. musculus Gene: U2af1 - ENSMUSG00000061613 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000061613
NameU2af1
DescriptionU2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Source:MGI Symbol;Acc:MGI:98884]
OrganismMus musculus (mouse)
Synonym(s)2010107d16rik, 35kda, q564e4, q99lx2, q9cz98

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:00000451 week (mouse)
363
  • 363
  • 422
  • 490
  • 494
  • 570
99.13
  • 99.13
  • 98.98
  • 98.82
  • 98.81
  • 98.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000022Theiler stage 15 (mouse)
367
  • 367
  • 419
  • 466
  • 1.64e3
99.12
  • 99.12
  • 98.99
  • 98.88
  • 96.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
378
  • 378
99.09
  • 99.09
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
378
  • 378
  • 917
  • 1.04e3
99.09
  • 99.09
  • 97.79
  • 97.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
415
  • 415
99.00
  • 99.00
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
526
  • 526
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
547
  • 547
  • 9.21e3
98.68
  • 98.68
  • 77.78
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
684
  • 684
  • 789
98.35
  • 98.35
  • 98.10
AEIR
  • AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
777
  • 777
98.13
  • 98.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
861
  • 861
  • 2.23e3
97.92
  • 97.92
  • 94.62
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000776 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
941
  • 941
  • 1.39e3
  • 1.51e3
  • 1.93e3
  • 2.14e3
  • 2.44e3
97.73
  • 97.73
  • 96.65
  • 96.35
  • 95.34
  • 94.84
  • 94.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
998
  • 998
97.59
  • 97.59
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.17e3
  • 1.17e3
97.18
  • 97.18
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
1.25e3
  • 1.25e3
  • 1.62e3
  • 1.45e4
97.00
  • 97.00
  • 96.09
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.25e3
  • 1.25e3
  • 2.17e3
96.97
  • 96.97
  • 94.76
AEIR
  • AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.31e3
  • 1.31e3
96.84
  • 96.84
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.38e3
  • 1.38e3
  • 2.31e3
96.66
  • 96.66
  • 94.41
AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
1.42e3
  • 1.42e3
96.57
  • 96.57
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
1.43e3
  • 1.43e3
96.56
  • 96.56
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.48e3
  • 1.48e3
96.43
  • 96.43
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.50e3
  • 1.50e3
96.38
  • 96.38
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.63e3
  • 1.63e3
96.06
  • 96.06
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.75e3
  • 1.75e3
95.78
  • 95.78
AEIR
  • AEIR
CL:0000094granulocyte
  • MmusDv:00000622 month-old stage (mouse)
1.89e3
  • 1.89e3
95.45
  • 95.45
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.90e3
  • 1.90e3
95.42
  • 95.42
AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.97e3
  • 1.97e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000112sexually immature stage
1.98e3
  • 1.98e3
  • 2.61e3
  • 3.70e3
95.23
  • 95.23
  • 93.71
  • 91.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
2.00e3
  • 2.00e3
  • 2.59e3
  • 3.26e3
  • 1.45e4
95.17
  • 95.17
  • 93.75
  • 92.13
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
2.01e3
  • 2.01e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
2.01e3
  • 2.01e3
  • 2.46e3
  • 3.33e3
  • 1.18e4
95.14
  • 95.14
  • 94.06
  • 91.97
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
2.05e3
  • 2.05e3
95.04
  • 95.04
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
2.13e3
  • 2.13e3
94.85
  • 94.85
AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
2.14e3
  • 2.14e3
94.84
  • 94.84
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.16e3
  • 2.16e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.18e3
  • 2.18e3
94.74
  • 94.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.19e3
  • 2.19e3
  • 2.33e3
94.70
  • 94.70
  • 94.39
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.25e3
  • 2.25e3
94.58
  • 94.58
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.36e3
  • 2.36e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0007221neonate stage
2.37e3
  • 2.37e3
  • 2.53e3
  • 2.54e3
  • 1.32e4
94.29
  • 94.29
  • 93.90
  • 93.88
  • 68.18
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000654primary oocyte
  • UBERON:0000104life cycle
2.45e3
  • 2.45e3
94.10
  • 94.10
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
2.51e3
  • 2.51e3
93.94
  • 93.94
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.52e3
  • 2.52e3
93.92
  • 93.92
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
2.58e3
  • 2.58e3
  • 3.46e3
93.77
  • 93.77
  • 91.66
AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
2.77e3
  • 2.77e3
93.32
  • 93.32
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.79e3
  • 2.79e3
93.27
  • 93.27
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
2.88e3
  • 2.88e3
  • 1.29e4
93.06
  • 93.06
  • 68.75
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.10e3
  • 3.10e3
92.51
  • 92.51
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
3.15e3
  • 3.15e3
  • 3.96e3
  • 3.98e3
  • 1.02e4
92.40
  • 92.40
  • 90.45
  • 90.40
  • 75.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
3.20e3
  • 3.20e3
92.28
  • 92.28
AEIR
  • AEIR
UBERON:0000981femur
  • MmusDv:0000032Theiler stage 23 (mouse)
4.01e3
  • 4.01e3
90.32
  • 90.32
AEIR
  • AEIR
UBERON:0000966retina
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0007221neonate stage
4.14e3
  • 4.14e3
  • 7.89e3
90.00
  • 90.00
  • 80.95
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
4.50e3
  • 4.50e3
89.15
  • 89.15
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
4.54e3
  • 4.54e3
  • 6.63e3
  • 1.13e4
89.03
  • 89.03
  • 84.00
  • 72.72
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
4.60e3
  • 4.60e3
88.91
  • 88.91
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:0000061early adult stage
4.60e3
  • 4.60e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0012238ureteric bud trunk
  • MmusDv:0000032Theiler stage 23 (mouse)
4.78e3
  • 4.78e3
88.46
  • 88.46
AEIR
  • AEIR
UBERON:0002228rib
  • MmusDv:0000032Theiler stage 23 (mouse)
5.18e3
  • 5.18e3
87.49
  • 87.49
AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
5.55e3
  • 5.55e3
86.60
  • 86.60
AEIR
  • AEIR
EMAPA:28500early tubule (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
6.09e3
  • 6.09e3
85.29
  • 85.29
AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
6.32e3
  • 6.32e3
84.76
  • 84.76
AEIR
  • AEIR
UBERON:0006364ureteric bud tip
  • MmusDv:0000032Theiler stage 23 (mouse)
6.47e3
  • 6.47e3
84.37
  • 84.37
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • MmusDv:0000024Theiler stage 17 (mouse)
6.59e3
  • 6.59e3
84.09
  • 84.09
AEIR
  • AEIR
UBERON:0000976humerus
  • MmusDv:0000032Theiler stage 23 (mouse)
6.91e3
  • 6.91e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0001694petrous part of temporal bone
  • MmusDv:0000032Theiler stage 23 (mouse)
7.40e3
  • 7.40e3
82.13
  • 82.13
AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000029Theiler stage 22 (mouse)
8.29e3
  • 8.29e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
8.48e3
  • 8.48e3
  • 1.04e4
79.54
  • 79.54
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0002478orbitosphenoid
  • MmusDv:0000032Theiler stage 23 (mouse)
8.81e3
  • 8.81e3
78.73
  • 78.73
AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
8.88e3
  • 8.88e3
  • 1.04e4
78.57
  • 78.57
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • MmusDv:0000029Theiler stage 22 (mouse)
9.06e3
  • 9.06e3
78.12
  • 78.12
AEIR
  • AEIR
UBERON:0003107Meckel's cartilage
  • MmusDv:0000032Theiler stage 23 (mouse)
9.17e3
  • 9.17e3
77.86
  • 77.86
AEIR
  • AEIR
EMAPA:28533male associated reproductive structure (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
9.21e3
  • 9.21e3
77.78
  • 77.78
AEIR
  • AEIR
UBERON:0006428basisphenoid bone
  • MmusDv:0000032Theiler stage 23 (mouse)
9.95e3
  • 9.95e3
75.99
  • 75.99
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
75.75
  • 75.75
AEIR
  • AEIR
UBERON:0003339ganglion of central nervous system
  • MmusDv:0000028Theiler stage 21 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0003134female reproductive organ
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000011parasympathetic nervous system
  • MmusDv:0000029Theiler stage 22 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000076external ectoderm
  • MmusDv:0000024Theiler stage 17 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002435striatum
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0007221neonate stage
1.04e4
  • 1.04e4
  • 1.13e4
75.00
  • 75.00
  • 72.72
AEIR
  • AEIR
  • AEIR
UBERON:0000003naris
  • MmusDv:0000032Theiler stage 23 (mouse)
1.04e4
  • 1.04e4
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.04e4
  • 1.04e4
  • 1.10e4
74.99
  • 74.99
  • 73.33
AEIR
  • AEIR
  • AEIR
UBERON:0001692basioccipital bone
  • MmusDv:0000032Theiler stage 23 (mouse)
1.07e4
  • 1.07e4
74.27
  • 74.27
AEIR
  • AEIR
UBERON:0001334female urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
1.12e4
  • 1.12e4
73.07
  • 73.07
AEIR
  • AEIR
UBERON:0000080mesonephros
  • MmusDv:0000024Theiler stage 17 (mouse)
1.13e4
  • 1.13e4
72.72
  • 72.72
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000024Theiler stage 17 (mouse)
1.18e4
  • 1.18e4
71.42
  • 71.42
AEIR
  • AEIR
UBERON:0035007nasal concha cartilage
  • MmusDv:0000032Theiler stage 23 (mouse)
1.20e4
  • 1.20e4
70.95
  • 70.95
AEIR
  • AEIR
UBERON:0001333male urethra
  • MmusDv:0000032Theiler stage 23 (mouse)
1.21e4
  • 1.21e4
70.83
  • 70.83
AEIR
  • AEIR
UBERON:0002240spinal cord
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
1.24e4
  • 1.24e4
  • 1.34e4
69.99
  • 69.99
  • 67.64
AEIR
  • AEIR
  • AEIR
UBERON:0006241future spinal cord
  • MmusDv:0000024Theiler stage 17 (mouse)
1.27e4
  • 1.27e4
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0006849scapula
  • MmusDv:0000032Theiler stage 23 (mouse)
1.29e4
  • 1.29e4
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • MmusDv:0000024Theiler stage 17 (mouse)
1.33e4
  • 1.33e4
67.85
  • 67.85
AEIR
  • AEIR
UBERON:0001424ulna
  • MmusDv:0000032Theiler stage 23 (mouse)
1.38e4
  • 1.38e4
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000979tibia
  • MmusDv:0000032Theiler stage 23 (mouse)
1.38e4
  • 1.38e4
66.66
  • 66.66
AEIR
  • AEIR
UBERON:0004637otic capsule
  • MmusDv:0000032Theiler stage 23 (mouse)
1.47e4
  • 1.47e4
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0007830pelvic girdle bone/zone
  • MmusDv:0000032Theiler stage 23 (mouse)
1.50e4
  • 1.50e4
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0001706nasal septum
  • MmusDv:0000032Theiler stage 23 (mouse)
1.73e4
  • 1.73e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0001423radius bone
  • MmusDv:0000032Theiler stage 23 (mouse)
1.78e4
  • 1.78e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001105clavicle bone
  • MmusDv:0000032Theiler stage 23 (mouse)
1.91e4
  • 1.91e4
53.97
  • 53.97
AEIR
  • AEIR
UBERON:0001446fibula
  • MmusDv:0000032Theiler stage 23 (mouse)
1.91e4
  • 1.91e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0004339vault of skull
  • MmusDv:0000032Theiler stage 23 (mouse)
1.99e4
  • 1.99e4
51.97
  • 51.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: MGI
  • RNA-Seq data: GEO

Cross-references

CCDSCCDS28611 (CCDS28611.1), CCDS50055 (CCDS50055.1)
EMBLAC090881, AK008332, AK012849, AK088979, AK150872, BC002184, BC115479, BC115480, CH466640
EnsemblENSMUSG00000061613 (U2af1)
MGIMGI:98884 (U2af1)
Uniprot/SPTREMBLG3UW94, G3UW94_MOUSE, Q14C24, Q14C24_MOUSE
Uniprot/SWISSPROTQ9D883, U2AF1_MOUSE

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