M. musculus Gene: Trim38 - ENSMUSG00000064140 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000064140
NameTrim38
Descriptiontripartite motif-containing 38 [Source:MGI Symbol;Acc:MGI:2684869]
OrganismMus musculus (mouse)
Synonym(s)gm23, loc214158

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.80e3
  • 8.80e3
78.76
  • 78.76
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
8.91e3
  • 8.91e3
78.48
  • 78.48
AEIR
  • AEIR
CL:0000654primary oocyte
  • UBERON:0000104life cycle
9.83e3
  • 9.83e3
76.27
  • 76.27
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.90e3
  • 9.90e3
76.11
  • 76.11
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
75.35
  • 75.35
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
73.19
  • 73.19
AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
1.22e4
  • 1.22e4
  • 1.35e4
  • 2.10e4
70.49
  • 70.49
  • 67.44
  • 49.30
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.34e4
  • 1.34e4
67.53
  • 67.53
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
  • 3.07e4
59.98
  • 59.98
  • 25.85
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.67e4
  • 1.67e4
59.64
  • 59.64
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
  • 2.25e4
  • 2.52e4
58.38
  • 58.38
  • 45.64
  • 39.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
1.76e4
  • 1.76e4
  • 2.43e4
  • 2.92e4
  • 3.08e4
57.61
  • 57.61
  • 41.40
  • 29.57
  • 25.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
56.42
  • 56.42
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
1.85e4
  • 1.85e4
  • 2.60e4
  • 2.70e4
55.23
  • 55.23
  • 37.21
  • 34.76
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
1.88e4
  • 1.88e4
54.57
  • 54.57
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.90e4
  • 1.90e4
54.09
  • 54.09
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.95e4
  • 1.95e4
52.81
  • 52.81
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.98e4
  • 1.98e4
  • 2.75e4
  • 2.76e4
52.32
  • 52.32
  • 33.58
  • 33.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.98e4
  • 1.98e4
52.17
  • 52.17
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
2.12e4
  • 2.12e4
48.88
  • 48.88
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.21e4
  • 2.21e4
46.67
  • 46.67
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.25e4
  • 2.25e4
45.67
  • 45.67
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000644 month-old stage (mouse)
2.32e4
  • 2.32e4
  • 2.55e4
44.06
  • 44.06
  • 38.48
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.40e4
  • 2.40e4
42.15
  • 42.15
AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000633 month-old stage (mouse)
2.46e4
  • 2.46e4
  • 2.71e4
  • 3.09e4
40.55
  • 40.55
  • 34.60
  • 25.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
2.53e4
  • 2.53e4
  • 2.80e4
  • 3.17e4
39.00
  • 39.00
  • 32.49
  • 23.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.62e4
  • 2.62e4
36.70
  • 36.70
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.66e4
  • 2.66e4
35.82
  • 35.82
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00000451 week (mouse)
2.67e4
  • 2.67e4
35.66
  • 35.66
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.68e4
  • 2.68e4
35.41
  • 35.41
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.70e4
  • 2.70e4
34.87
  • 34.87
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
2.70e4
  • 2.70e4
  • 2.76e4
34.81
  • 34.81
  • 33.43
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
2.73e4
  • 2.73e4
33.99
  • 33.99
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.75e4
  • 2.75e4
33.73
  • 33.73
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
2.75e4
  • 2.75e4
33.68
  • 33.68
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.77e4
  • 2.77e4
33.16
  • 33.16
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.80e4
  • 2.80e4
32.43
  • 32.43
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
2.88e4
  • 2.88e4
30.56
  • 30.56
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
3.30e4
  • 3.30e4
20.33
  • 20.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

CCDSCCDS26370 (CCDS26370.1)
EMBLAL590388
EnsemblENSMUSG00000064140 (Trim38)
MGIMGI:2684869 (Trim38)
Uniprot/SPTREMBLQ5SZ99, Q5SZ99_MOUSE

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