M. musculus Gene: Syngap1 - ENSMUSG00000067629 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000067629
NameSyngap1
Descriptionsynaptic Ras GTPase activating protein 1 homolog (rat) [Source:MGI Symbol;Acc:MGI:3039785]
OrganismMus musculus (mouse)
Synonym(s)gm1963, syngap

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
657
  • 657
  • 1.16e3
  • 1.19e3
98.41528
  • 98.41528
  • 97.20186
  • 97.12055
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
697
  • 697
98.31871
  • 98.31871
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
721
  • 721
98.26246
  • 98.26246
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
773
  • 773
98.13687
  • 98.13687
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
889
  • 889
  • 3.01e3
  • 7.13e3
97.85633
  • 97.85633
  • 92.73781
  • 82.79334
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
971
  • 971
97.65695
  • 97.65695
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.08e3
  • 2.08e3
94.97624
  • 94.97624
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
2.34e3
  • 2.34e3
  • 6.54e3
94.36255
  • 94.36255
  • 84.21053
AEIR
  • AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
2.73e3
  • 2.73e3
  • 4.28e3
93.40526
  • 93.40526
  • 89.65744
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
2.84e3
  • 2.84e3
93.14198
  • 93.14198
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
2.92e3
  • 2.92e3
92.95285
  • 92.95285
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
3.08e3
  • 3.08e3
92.56019
  • 92.56019
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
3.09e3
  • 3.09e3
  • 6.68e3
  • 7.73e3
92.54957
  • 92.54957
  • 83.87977
  • 81.33486
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
3.10e3
  • 3.10e3
  • 3.91e3
  • 4.22e3
  • 4.64e3
  • 5.06e3
92.52057
  • 92.52057
  • 90.55140
  • 89.80311
  • 88.80763
  • 87.79795
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
3.47e3
  • 3.47e3
91.62977
  • 91.62977
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
3.68e3
  • 3.68e3
  • 5.72e3
  • 6.39e3
  • 9.17e3
91.11910
  • 91.11910
  • 86.19920
  • 84.58076
  • 77.85847
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
3.78e3
  • 3.78e3
90.86574
  • 90.86574
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
4.16e3
  • 4.16e3
89.96960
  • 89.96960
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
4.17e3
  • 4.17e3
89.93899
  • 89.93899
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
4.60e3
  • 4.60e3
  • 5.39e3
  • 5.41e3
88.88655
  • 88.88655
  • 86.97921
  • 86.93479
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
4.93e3
  • 4.93e3
88.09029
  • 88.09029
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
5.58e3
  • 5.58e3
86.53262
  • 86.53262
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000644 month-old stage (mouse)
5.72e3
  • 5.72e3
  • 6.52e3
86.19896
  • 86.19896
  • 84.26166
AEIR
  • AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
5.86e3
  • 5.86e3
85.86398
  • 85.86398
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
7.23e3
  • 7.23e3
82.54466
  • 82.54466
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
8.00e3
  • 8.00e3
80.68324
  • 80.68324
AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
8.14e3
  • 8.14e3
  • 9.40e3
80.36089
  • 80.36089
  • 77.31094
AEIR
  • AEIR
  • AEIR
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
8.41e3
  • 8.41e3
79.69580
  • 79.69580
AEIR
  • AEIR
UBERON:0002371bone marrow
  • MmusDv:00000528 weeks (mouse)
8.60e3
  • 8.60e3
79.24191
  • 79.24191
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:000005511 weeks (mouse)
9.18e3
  • 9.18e3
  • 1.36e4
  • 1.39e4
  • 1.42e4
  • 1.55e4
77.84582
  • 77.84582
  • 67.08119
  • 66.40753
  • 65.62663
  • 62.69435
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
9.19e3
  • 9.19e3
77.80676
  • 77.80676
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000112sexually immature stage
9.50e3
  • 9.50e3
  • 1.06e4
  • 1.24e4
77.07620
  • 77.07620
  • 74.45437
  • 70.00966
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
9.56e3
  • 9.56e3
76.91065
  • 76.91065
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
75.73197
  • 75.73197
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
74.54155
  • 74.54155
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
1.09e4
  • 1.09e4
  • 1.11e4
  • 1.32e4
73.64290
  • 73.64290
  • 73.18209
  • 68.09392
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.10e4
  • 1.10e4
73.41234
  • 73.41234
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
72.44116
  • 72.44116
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
1.17e4
  • 1.17e4
  • 1.28e4
71.75785
  • 71.75785
  • 69.02233
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
71.58411
  • 71.58411
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
71.28607
  • 71.28607
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
70.58407
  • 70.58407
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
70.49959
  • 70.49959
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
70.42588
  • 70.42588
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.23e4
  • 1.23e4
  • 1.34e4
70.40722
  • 70.40722
  • 67.54952
AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
1.27e4
  • 1.27e4
69.39319
  • 69.39319
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
69.01248
  • 69.01248
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.29e4
  • 1.29e4
  • 1.50e4
68.97549
  • 68.97549
  • 63.69037
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • MmusDv:00000622 month-old stage (mouse)
1.33e4
  • 1.33e4
67.98407
  • 67.98407
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
1.38e4
  • 1.38e4
66.78708
  • 66.78708
AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
1.41e4
  • 1.41e4
66.01400
  • 66.01400
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
1.53e4
  • 1.53e4
63.03959
  • 63.03959
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

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