M. musculus Gene: Col28a1 - ENSMUSG00000068794 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000068794
NameCol28a1
Descriptioncollagen, type XXVIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2685312]
OrganismMus musculus (mouse)
Synonym(s)col28, gm466, q2uy10

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000017spermatocyte
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
73.05167
  • 73.05167
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
1.20e4
  • 1.20e4
70.98298
  • 70.98298
AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
1.20e4
  • 1.20e4
70.91260
  • 70.91260
AEIR
  • AEIR
CL:0000018spermatid
  • UBERON:0000113post-juvenile adult stage
1.24e4
  • 1.24e4
70.14244
  • 70.14244
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
69.61306
  • 69.61306
AEIR
  • AEIR
CL:0000654primary oocyte
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
68.77960
  • 68.77960
AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
1.33e4
  • 1.33e4
67.88221
  • 67.88221
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
66.80241
  • 66.80241
AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
1.43e4
  • 1.43e4
65.38146
  • 65.38146
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.49e4
  • 1.49e4
  • 1.74e4
  • 1.75e4
64.09223
  • 64.09223
  • 57.99896
  • 57.69686
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
1.49e4
  • 1.49e4
63.96391
  • 63.96391
AEIR
  • AEIR
UBERON:0000922embryo
  • MmusDv:0000032Theiler stage 23 (mouse)
1.50e4
  • 1.50e4
63.89853
  • 63.89853
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000061early adult stage
1.55e4
  • 1.55e4
  • 1.68e4
  • 2.04e4
62.53286
  • 62.53286
  • 59.33607
  • 50.68085
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
62.47996
  • 62.47996
AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.61e4
  • 1.61e4
61.12265
  • 61.12265
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.71e4
  • 1.71e4
  • 1.93e4
  • 1.97e4
58.62866
  • 58.62866
  • 53.44993
  • 52.46934
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
1.71e4
  • 1.71e4
  • 2.24e4
58.62364
  • 58.62364
  • 46.01593
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
1.72e4
  • 1.72e4
  • 1.78e4
58.56202
  • 58.56202
  • 57.00476
AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.73e4
  • 1.73e4
58.30072
  • 58.30072
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
57.92279
  • 57.92279
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
1.75e4
  • 1.75e4
  • 1.81e4
  • 1.93e4
57.80775
  • 57.80775
  • 56.41219
  • 53.47728
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.76e4
  • 1.76e4
  • 1.89e4
  • 1.90e4
  • 2.04e4
57.62262
  • 57.62262
  • 54.29227
  • 54.16193
  • 50.79503
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.81e4
  • 1.81e4
56.18906
  • 56.18906
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.82e4
  • 1.82e4
56.04329
  • 56.04329
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.82e4
  • 1.82e4
55.95864
  • 55.95864
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.83e4
  • 1.83e4
55.87231
  • 55.87231
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
1.83e4
  • 1.83e4
55.79973
  • 55.79973
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.86e4
  • 1.86e4
55.16610
  • 55.16610
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
1.90e4
  • 1.90e4
  • 2.08e4
54.14565
  • 54.14565
  • 49.80495
AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.93e4
  • 1.93e4
53.37250
  • 53.37250
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
1.94e4
  • 1.94e4
  • 2.27e4
  • 3.09e4
53.25155
  • 53.25155
  • 45.26074
  • 25.42250
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.94e4
  • 1.94e4
53.08076
  • 53.08076
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
51.92291
  • 51.92291
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.03e4
  • 2.03e4
51.05949
  • 51.05949
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.06e4
  • 2.06e4
50.25838
  • 50.25838
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
2.07e4
  • 2.07e4
  • 2.16e4
49.99413
  • 49.99413
  • 47.90415
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
2.11e4
  • 2.11e4
49.04392
  • 49.04392
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
2.14e4
  • 2.14e4
  • 2.14e4
  • 2.35e4
48.43974
  • 48.43974
  • 48.38544
  • 43.31936
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.25e4
  • 2.25e4
45.72948
  • 45.72948
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
2.34e4
  • 2.34e4
43.53337
  • 43.53337
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
2.50e4
  • 2.50e4
39.57846
  • 39.57846
AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.89e4
  • 2.89e4
30.24867
  • 30.24867
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

CCDSCCDS39424 (CCDS39424.1)
EMBLAJ890449, AJ890450
EnsemblENSMUSG00000068794 (Col28a1)
MGIMGI:2685312 (Col28a1)
Uniprot/SWISSPROTCOSA1_MOUSE, Q2UY11

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