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M. musculus Gene: B3gnt6 - ENSMUSG00000074004 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000074004
NameB3gnt6
DescriptionUDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase) [Source:MGI Symbol;Acc:MGI:3039603]
OrganismMus musculus (mouse)
Synonym(s)bc039789, core-3, core3
Orthologs(s)18 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000059large intestine
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
4.18e3
  • 4.18e3
  • 6.79e3
89.98
  • 89.98
  • 83.71
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000517 weeks (mouse)
  • MmusDv:00000539 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
6.06e3
  • 6.06e3
  • 6.41e3
  • 7.79e3
  • 7.99e3
  • 8.11e3
  • 1.38e4
85.47
  • 85.47
  • 84.61
  • 81.31
  • 80.84
  • 80.55
  • 66.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001736submandibular gland
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.36e3
  • 6.36e3
  • 8.16e3
84.73
  • 84.73
  • 80.43
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
8.30e3
  • 8.30e3
  • 1.09e4
80.07
  • 80.07
  • 73.79
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
9.32e3
  • 9.32e3
  • 1.76e4
77.64
  • 77.64
  • 57.78
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
1.17e4
  • 1.17e4
  • 2.53e4
71.99
  • 71.99
  • 39.34
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000484 weeks (mouse)
  • MmusDv:00000473 weeks (mouse)
1.44e4
  • 1.44e4
  • 1.71e4
  • 1.94e4
65.50
  • 65.50
  • 58.92
  • 53.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001044saliva-secreting gland
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000061early adult stage
1.49e4
  • 1.49e4
  • 2.03e4
  • 2.54e4
64.25
  • 64.25
  • 51.27
  • 39.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.57e4
  • 1.57e4
  • 2.50e4
62.41
  • 62.41
  • 40.01
AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
  • MmusDv:0000061early adult stage
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
1.64e4
  • 1.64e4
  • 2.04e4
  • 2.51e4
  • 2.52e4
  • 2.52e4
  • 2.55e4
  • 2.65e4
60.70
  • 60.70
  • 51.07
  • 39.75
  • 39.63
  • 39.62
  • 38.85
  • 36.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:00000506 weeks (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
1.68e4
  • 1.68e4
  • 2.41e4
59.60
  • 59.60
  • 42.21
AEIR
  • AEIR
  • AEIR
UBERON:0001255urinary bladder
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
57.04
  • 57.04
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.81e4
  • 1.81e4
56.68
  • 56.68
AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.86e4
  • 1.86e4
  • 1.95e4
  • 2.08e4
  • 2.25e4
  • 2.45e4
55.40
  • 55.40
  • 53.26
  • 50.06
  • 45.91
  • 41.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.92e4
  • 1.92e4
53.94
  • 53.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000061early adult stage
1.92e4
  • 1.92e4
  • 2.72e4
53.93
  • 53.93
  • 34.62
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
1.93e4
  • 1.93e4
  • 2.20e4
  • 2.39e4
  • 2.63e4
53.75
  • 53.75
  • 47.27
  • 42.64
  • 36.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.95e4
  • 1.95e4
  • 2.06e4
  • 2.24e4
53.10
  • 53.10
  • 50.50
  • 46.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • UBERON:0007221neonate stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
1.96e4
  • 1.96e4
  • 1.97e4
  • 2.22e4
52.88
  • 52.88
  • 52.81
  • 46.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.99e4
  • 1.99e4
52.35
  • 52.35
AEIR
  • AEIR
UBERON:0002369adrenal gland
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
52.14
  • 52.14
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.01e4
  • 2.01e4
51.78
  • 51.78
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.02e4
  • 2.02e4
  • 2.09e4
51.63
  • 51.63
  • 49.97
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000622 month-old stage (mouse)
2.02e4
  • 2.02e4
  • 2.30e4
  • 2.48e4
51.59
  • 51.59
  • 44.81
  • 40.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.03e4
  • 2.03e4
  • 2.34e4
  • 2.81e4
51.25
  • 51.25
  • 43.81
  • 32.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:00000462 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0007221neonate stage
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000068embryo stage
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000104life cycle
2.04e4
  • 2.04e4
  • 2.13e4
  • 2.30e4
  • 2.33e4
  • 2.46e4
  • 2.49e4
  • 2.50e4
  • 2.50e4
  • 2.51e4
  • 2.51e4
  • 2.54e4
  • 2.55e4
  • 2.56e4
  • 2.56e4
  • 2.56e4
  • 2.58e4
  • 2.65e4
51.09
  • 51.09
  • 48.96
  • 44.89
  • 44.06
  • 40.92
  • 40.32
  • 39.95
  • 39.92
  • 39.86
  • 39.65
  • 39.00
  • 38.81
  • 38.69
  • 38.59
  • 38.58
  • 38.19
  • 36.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
2.06e4
  • 2.06e4
  • 2.16e4
  • 2.17e4
  • 2.34e4
  • 2.53e4
  • 2.54e4
  • 2.55e4
  • 2.57e4
50.63
  • 50.63
  • 48.28
  • 47.99
  • 43.75
  • 39.31
  • 39.08
  • 38.87
  • 38.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
2.07e4
  • 2.07e4
50.44
  • 50.44
AEIR
  • AEIR
CL:0002476bone marrow macrophage
  • MmusDv:00000528 weeks (mouse)
2.07e4
  • 2.07e4
50.22
  • 50.22
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • MmusDv:00000462 weeks (mouse)
2.12e4
  • 2.12e4
  • 2.47e4
  • 2.49e4
  • 2.52e4
49.10
  • 49.10
  • 40.64
  • 40.14
  • 39.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.16e4
  • 2.16e4
48.23
  • 48.23
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.16e4
  • 2.16e4
48.18
  • 48.18
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000066fully formed stage
  • MmusDv:0000076aged adult stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:0000097late adult stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000622 month-old stage (mouse)
2.18e4
  • 2.18e4
  • 2.35e4
  • 2.38e4
  • 2.39e4
  • 2.48e4
  • 2.48e4
  • 2.50e4
  • 2.53e4
  • 2.55e4
47.59
  • 47.59
  • 43.58
  • 42.98
  • 42.76
  • 40.47
  • 40.47
  • 39.99
  • 39.19
  • 38.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
  • 2.31e4
  • 2.35e4
  • 2.36e4
  • 2.51e4
  • 2.56e4
  • 2.59e4
  • 2.78e4
  • 3.40e4
47.43
  • 47.43
  • 44.57
  • 43.69
  • 43.33
  • 39.72
  • 38.65
  • 37.76
  • 33.34
  • 18.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • MmusDv:00000622 month-old stage (mouse)
  • UBERON:0000104life cycle
2.20e4
  • 2.20e4
  • 2.29e4
  • 2.31e4
  • 2.33e4
  • 2.44e4
  • 2.54e4
  • 2.55e4
  • 2.59e4
47.28
  • 47.28
  • 45.10
  • 44.60
  • 44.17
  • 41.51
  • 38.96
  • 38.90
  • 37.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
  • 2.45e4
  • 2.51e4
  • 2.85e4
  • 3.20e4
47.23
  • 47.23
  • 41.17
  • 39.70
  • 31.69
  • 23.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.22e4
  • 2.22e4
  • 2.48e4
46.64
  • 46.64
  • 40.49
AEIR
  • AEIR
  • AEIR
UBERON:0001890forebrain
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000029Theiler stage 22 (mouse)
2.27e4
  • 2.27e4
  • 2.29e4
  • 2.48e4
45.57
  • 45.57
  • 44.96
  • 40.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.37e4
  • 2.37e4
43.12
  • 43.12
AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000104life cycle
2.43e4
  • 2.43e4
  • 2.45e4
41.58
  • 41.58
  • 41.30
AEIR
  • AEIR
  • AEIR
UBERON:0001348brown adipose tissue
  • MmusDv:00000695 month-old stage (mouse)
  • MmusDv:0000061early adult stage
2.44e4
  • 2.44e4
  • 2.47e4
41.38
  • 41.38
  • 40.68
AEIR
  • AEIR
  • AEIR
UBERON:0008971left colon
  • UBERON:0000104life cycle
2.45e4
  • 2.45e4
41.21
  • 41.21
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0000104life cycle
2.47e4
  • 2.47e4
40.84
  • 40.84
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • UBERON:0000066fully formed stage
2.49e4
  • 2.49e4
40.26
  • 40.26
AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000032Theiler stage 23 (mouse)
2.49e4
  • 2.49e4
40.16
  • 40.16
AEIR
  • AEIR
UBERON:0000006islet of Langerhans
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.50e4
  • 2.50e4
  • 2.66e4
40.03
  • 40.03
  • 36.23
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
2.52e4
  • 2.52e4
  • 2.52e4
  • 2.67e4
  • 2.81e4
39.55
  • 39.55
  • 39.45
  • 35.84
  • 32.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • MmusDv:0000029Theiler stage 22 (mouse)
2.61e4
  • 2.61e4
37.36
  • 37.36
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.64e4
  • 2.64e4
  • 2.66e4
  • 2.83e4
36.57
  • 36.57
  • 36.10
  • 32.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.76e4
  • 2.76e4
  • 3.01e4
33.88
  • 33.88
  • 27.78
AEIR
  • AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
2.90e4
  • 2.90e4
30.45
  • 30.45
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
2.93e4
  • 2.93e4
29.57
  • 29.57
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.94e4
  • 2.94e4
29.47
  • 29.47
AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
3.04e4
  • 3.04e4
27.14
  • 27.14
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
3.10e4
  • 3.10e4
25.68
  • 25.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species14 genesCompare expression
Euteleostomi14 species18 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000074004.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda1 geneCompare expression

Paralogy information comes from OMA : ENSMUSG00000074004.

Cross-references

CCDSCCDS40027 (CCDS40027.1)
EnsemblENSMUSG00000074004 (B3gnt6)
MGIMGI:3039603 (B3gnt6)
EMBLAK140429, BC039789
Uniprot/SWISSPROTB3GN6_MOUSE, Q3USF0

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