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M. musculus Gene: R3hdml - ENSMUSG00000078949 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000078949
NameR3hdml
DescriptionR3H domain containing-like [Source:MGI Symbol;Acc:MGI:3650937]
OrganismMus musculus (mouse)
Synonym(s)ottmusg00000001070
Orthologs(s)17 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000965lens of camera-type eye
  • UBERON:0007221neonate stage
  • MmusDv:00000451 week (mouse)
  • MmusDv:00001134-7 days (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
1.27e3
  • 1.27e3
  • 1.49e3
  • 1.60e3
  • 1.94e3
  • 2.76e3
96.96
  • 96.96
  • 96.44
  • 96.17
  • 95.35
  • 93.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000654primary oocyte
  • UBERON:0000104life cycle
4.84e3
  • 4.84e3
88.40
  • 88.40
AEIR
  • AEIR
UBERON:0002113kidney
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
5.33e3
  • 5.33e3
  • 6.27e3
87.21
  • 87.21
  • 84.95
AEIR
  • AEIR
  • AEIR
CL:0000655secondary oocyte
  • UBERON:0000104life cycle
7.60e3
  • 7.60e3
81.77
  • 81.77
AEIR
  • AEIR
CL:0000365zygote
  • UBERON:0000106zygote stage
1.00e4
  • 1.00e4
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • MmusDv:0000061early adult stage
1.16e4
  • 1.16e4
72.24
  • 72.24
AEIR
  • AEIR
UBERON:0004134proximal tubule
  • MmusDv:00000622 month-old stage (mouse)
1.28e4
  • 1.28e4
69.40
  • 69.40
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000112sexually immature stage
  • MmusDv:00000528 weeks (mouse)
1.34e4
  • 1.34e4
  • 1.37e4
  • 1.50e4
  • 1.62e4
67.75
  • 67.75
  • 67.20
  • 63.95
  • 61.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004539right kidney
  • MmusDv:00000622 month-old stage (mouse)
1.39e4
  • 1.39e4
66.55
  • 66.55
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
65.09
  • 65.09
AEIR
  • AEIR
UBERON:0002107liver
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:00000622 month-old stage (mouse)
1.46e4
  • 1.46e4
  • 1.49e4
  • 1.65e4
  • 1.71e4
  • 2.07e4
  • 2.19e4
  • 2.19e4
  • 3.10e4
64.89
  • 64.89
  • 64.31
  • 60.51
  • 58.92
  • 50.37
  • 47.47
  • 47.44
  • 25.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
64.30
  • 64.30
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.53e4
  • 1.53e4
63.25
  • 63.25
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
  • 2.59e4
60.26
  • 60.26
  • 37.82
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
57.42
  • 57.42
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.83e4
  • 1.83e4
  • 1.91e4
  • 3.10e4
56.14
  • 56.14
  • 54.23
  • 25.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.90e4
  • 1.90e4
54.36
  • 54.36
AEIR
  • AEIR
UBERON:0002028hindbrain
  • MmusDv:0000033Theiler stage 24 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
  • UBERON:0007221neonate stage
1.91e4
  • 1.91e4
  • 1.95e4
  • 2.03e4
54.17
  • 54.17
  • 53.22
  • 51.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
  • 2.39e4
  • 2.49e4
  • 3.55e4
52.50
  • 52.50
  • 42.68
  • 40.16
  • 14.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
2.02e4
  • 2.02e4
  • 2.64e4
  • 2.87e4
51.58
  • 51.58
  • 36.72
  • 31.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000032Theiler stage 23 (mouse)
2.03e4
  • 2.03e4
  • 2.40e4
51.31
  • 51.31
  • 42.49
AEIR
  • AEIR
  • AEIR
UBERON:0002101limb
  • MmusDv:0000032Theiler stage 23 (mouse)
2.05e4
  • 2.05e4
50.93
  • 50.93
AEIR
  • AEIR
UBERON:0001890forebrain
  • UBERON:0007221neonate stage
  • MmusDv:0000028Theiler stage 21 (mouse)
  • MmusDv:0000033Theiler stage 24 (mouse)
2.15e4
  • 2.15e4
  • 2.30e4
  • 2.41e4
48.46
  • 48.46
  • 44.90
  • 42.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0012314embryonic facial prominence
  • MmusDv:0000032Theiler stage 23 (mouse)
2.22e4
  • 2.22e4
46.74
  • 46.74
AEIR
  • AEIR
UBERON:0000992female gonad
  • MmusDv:00000644 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
2.22e4
  • 2.22e4
  • 2.62e4
46.72
  • 46.72
  • 37.16
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
2.51e4
  • 2.51e4
39.74
  • 39.74
AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:0000034Theiler stage 25 (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000066fully formed stage
2.55e4
  • 2.55e4
  • 3.11e4
  • 3.50e4
  • 3.68e4
38.83
  • 38.83
  • 25.39
  • 16.12
  • 11.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • MmusDv:0000061early adult stage
  • UBERON:0000066fully formed stage
  • UBERON:0000113post-juvenile adult stage
2.71e4
  • 2.71e4
  • 3.42e4
  • 3.89e4
34.97
  • 34.97
  • 18.00
  • 6.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
2.76e4
  • 2.76e4
33.80
  • 33.80
AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
2.82e4
  • 2.82e4
32.43
  • 32.43
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
2.85e4
  • 2.85e4
  • 2.90e4
31.73
  • 31.73
  • 30.43
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • MmusDv:0000033Theiler stage 24 (mouse)
2.88e4
  • 2.88e4
30.78
  • 30.78
AEIR
  • AEIR
UBERON:0002435striatum
  • UBERON:0000066fully formed stage
2.89e4
  • 2.89e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
2.96e4
  • 2.96e4
28.91
  • 28.91
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.99e4
  • 2.99e4
28.29
  • 28.29
AEIR
  • AEIR
UBERON:0002048lung
  • MmusDv:0000032Theiler stage 23 (mouse)
3.00e4
  • 3.00e4
28.01
  • 28.01
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
3.02e4
  • 3.02e4
27.56
  • 27.56
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
3.09e4
  • 3.09e4
25.91
  • 25.91
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000076aged adult stage (mouse)
  • UBERON:0000066fully formed stage
3.18e4
  • 3.18e4
  • 3.28e4
  • 3.34e4
  • 3.68e4
23.69
  • 23.69
  • 21.33
  • 19.74
  • 11.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000026Theiler stage 19 (mouse)
3.25e4
  • 3.25e4
22.05
  • 22.05
AEIR
  • AEIR
UBERON:0001987placenta
  • UBERON:0000113post-juvenile adult stage
3.30e4
  • 3.30e4
20.87
  • 20.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSMUSG00000078949.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSMUSG00000078949.

Cross-references

CCDSCCDS38316 (CCDS38316.1)
EnsemblENSMUSG00000078949 (R3hdml)
MGIMGI:3650937 (R3hdml)
EMBLAL591488
Uniprot/SWISSPROTA2A5I3, CRSPL_MOUSE

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