M. musculus Gene: Rtl1 - ENSMUSG00000085925 - Mus musculus (mouse)

General information

Ensembl IDENSMUSG00000085925
NameRtl1
Descriptionretrotransposon-like 1 [Source:MGI Symbol;Acc:MGI:2656842]
OrganismMus musculus (mouse)
Synonym(s)6430411k18rik, mar, mar1, mart1, mor1, peg11

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • MmusDv:0000029Theiler stage 22 (mouse)
  • MmusDv:0000027Theiler stage 20 (mouse)
1.35e3
  • 1.35e3
  • 2.50e3
96.74
  • 96.74
  • 93.97
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0007221neonate stage
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:000005511 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
3.31e3
  • 3.31e3
  • 1.15e4
  • 1.31e4
  • 1.37e4
  • 1.40e4
92.00
  • 92.00
  • 72.17
  • 68.29
  • 66.99
  • 66.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001987placenta
  • MmusDv:0000028Theiler stage 21 (mouse)
  • UBERON:0000113post-juvenile adult stage
5.53e3
  • 5.53e3
  • 9.72e3
86.65
  • 86.65
  • 76.54
AEIR
  • AEIR
  • AEIR
UBERON:0014892skeletal muscle organ
  • MmusDv:0000029Theiler stage 22 (mouse)
8.29e3
  • 8.29e3
80.00
  • 80.00
AEIR
  • AEIR
UBERON:0001723tongue
  • MmusDv:0000029Theiler stage 22 (mouse)
8.53e3
  • 8.53e3
79.41
  • 79.41
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
9.30e3
  • 9.30e3
  • 2.59e4
  • 2.60e4
77.56
  • 77.56
  • 37.47
  • 37.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0014765crus of diaphragm
  • MmusDv:0000029Theiler stage 22 (mouse)
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0005393cortical layer IV
  • UBERON:0007221neonate stage
1.04e4
  • 1.04e4
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000948heart
  • MmusDv:0000029Theiler stage 22 (mouse)
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:0000061early adult stage
1.04e4
  • 1.04e4
  • 2.09e4
  • 2.16e4
  • 2.18e4
74.99
  • 74.99
  • 49.63
  • 47.97
  • 47.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000044dorsal root ganglion
  • MmusDv:0000029Theiler stage 22 (mouse)
1.04e4
  • 1.04e4
74.99
  • 74.99
AEIR
  • AEIR
CL:0000057fibroblast
  • MmusDv:00000528 weeks (mouse)
1.13e4
  • 1.13e4
72.62
  • 72.62
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • MmusDv:0000022Theiler stage 15 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.18e4
  • 1.18e4
  • 1.49e4
  • 1.52e4
  • 1.62e4
71.43
  • 71.43
  • 63.98
  • 63.32
  • 60.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • MmusDv:0000029Theiler stage 22 (mouse)
1.22e4
  • 1.22e4
70.58
  • 70.58
AEIR
  • AEIR
UBERON:0001111intercostal muscle
  • MmusDv:0000029Theiler stage 22 (mouse)
1.24e4
  • 1.24e4
70.00
  • 70.00
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • MmusDv:00000528 weeks (mouse)
1.29e4
  • 1.29e4
68.84
  • 68.84
AEIR
  • AEIR
UBERON:0000160intestine
  • MmusDv:0000027Theiler stage 20 (mouse)
1.29e4
  • 1.29e4
68.77
  • 68.77
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • MmusDv:0000023Theiler stage 16 (mouse)
  • MmusDv:0000024Theiler stage 17 (mouse)
  • MmusDv:0000026Theiler stage 19 (mouse)
1.31e4
  • 1.31e4
  • 1.60e4
  • 1.66e4
68.46
  • 68.46
  • 61.39
  • 60.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
1.32e4
  • 1.32e4
68.12
  • 68.12
AEIR
  • AEIR
UBERON:0007144embryonic post-anal tail
  • MmusDv:0000022Theiler stage 15 (mouse)
1.34e4
  • 1.34e4
67.57
  • 67.57
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
67.23
  • 67.23
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
  • MmusDv:00000528 weeks (mouse)
1.36e4
  • 1.36e4
  • 1.42e4
67.12
  • 67.12
  • 65.62
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
1.44e4
  • 1.44e4
65.30
  • 65.30
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • MmusDv:0000061early adult stage
1.48e4
  • 1.48e4
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0005876undifferentiated genital tubercle
  • MmusDv:0000026Theiler stage 19 (mouse)
  • MmusDv:0000028Theiler stage 21 (mouse)
1.53e4
  • 1.53e4
  • 1.54e4
63.05
  • 63.05
  • 62.89
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • MmusDv:00000528 weeks (mouse)
  • MmusDv:00000633 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
1.54e4
  • 1.54e4
  • 1.67e4
  • 1.69e4
62.79
  • 62.79
  • 59.64
  • 59.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005343cortical plate
  • MmusDv:0000029Theiler stage 22 (mouse)
1.63e4
  • 1.63e4
60.72
  • 60.72
AEIR
  • AEIR
UBERON:0003902retinal neural layer
  • MmusDv:00000622 month-old stage (mouse)
1.64e4
  • 1.64e4
60.31
  • 60.31
AEIR
  • AEIR
CL:2000089dentate gyrus of hippocampal formation granule cell
  • MmusDv:0000061early adult stage
1.65e4
  • 1.65e4
60.12
  • 60.12
AEIR
  • AEIR
UBERON:0002532epiblast (generic)
  • MmusDv:0000015Theiler stage 10 (mouse)
1.71e4
  • 1.71e4
58.79
  • 58.79
AEIR
  • AEIR
UBERON:0005391cortical layer II
  • UBERON:0007221neonate stage
1.78e4
  • 1.78e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0005392cortical layer III
  • UBERON:0007221neonate stage
1.78e4
  • 1.78e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.78e4
  • 1.78e4
56.92
  • 56.92
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • MmusDv:0000032Theiler stage 23 (mouse)
  • MmusDv:0000035Theiler stage 26 (mouse)
  • MmusDv:00000451 week (mouse)
  • UBERON:0007221neonate stage
1.91e4
  • 1.91e4
  • 1.96e4
  • 2.00e4
  • 2.10e4
53.91
  • 53.91
  • 52.59
  • 51.79
  • 49.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004023ganglionic eminence
  • MmusDv:0000029Theiler stage 22 (mouse)
1.95e4
  • 1.95e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.99e4
  • 1.99e4
52.07
  • 52.07
AEIR
  • AEIR
CL:0002322embryonic stem cell
  • UBERON:0000106zygote stage
2.09e4
  • 2.09e4
49.60
  • 49.60
AEIR
  • AEIR
UBERON:0004364ectoplacental cone
  • MmusDv:0000019Theiler stage 12 (mouse)
2.09e4
  • 2.09e4
49.51
  • 49.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • MmusDv:00000622 month-old stage (mouse)
  • MmusDv:0000076aged adult stage (mouse)
2.15e4
  • 2.15e4
  • 2.68e4
48.17
  • 48.17
  • 35.40
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
2.22e4
  • 2.22e4
46.40
  • 46.40
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.24e4
  • 2.24e4
45.88
  • 45.88
AEIR
  • AEIR
UBERON:0001833lip
  • MmusDv:0000061early adult stage
2.39e4
  • 2.39e4
42.30
  • 42.30
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
2.42e4
  • 2.42e4
41.67
  • 41.67
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
2.74e4
  • 2.74e4
33.89
  • 33.89
AEIR
  • AEIR
UBERON:0002370thymus
  • MmusDv:00000528 weeks (mouse)
  • UBERON:0000113post-juvenile adult stage
2.80e4
  • 2.80e4
  • 3.20e4
32.36
  • 32.36
  • 22.77
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.17e4
  • 3.17e4
23.47
  • 23.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: MGI
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

CCDSCCDS26170 (CCDS26170.1)
EMBLAC152063, BK001261, EU434913, EU434918
EnsemblENSMUSG00000085925 (Rtl1)
MGIMGI:2656842 (Rtl1)
Uniprot/SPTREMBLB4YB44, B4YB44_MOUSE
Uniprot/SWISSPROTQ7M732, RTL1_MOUSE

Do not show this banner again