O. anatinus Gene: VBP1 - ENSOANG00000001269 - Ornithorhynchus anatinus (platypus)

General information

Ensembl IDENSOANG00000001269
NameVBP1
Descriptionvon Hippel-Lindau binding protein 1 [Source:HGNC Symbol;Acc:HGNC:12662]
OrganismOrnithorhynchus anatinus (platypus)
Synonym(s)pfd3, pfdn3
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000057fibroblast
  • UBERON:0018241prime adult stage
1.69e3
  • 1.69e3
92.38
  • 92.38
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0018241prime adult stage
  • UBERON:0000113post-juvenile adult stage
3.35e3
  • 3.35e3
  • 5.48e3
84.90
  • 84.90
  • 75.33
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
3.90e3
  • 3.90e3
82.43
  • 82.43
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
4.37e3
  • 4.37e3
80.34
  • 80.34
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
4.74e3
  • 4.74e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
5.16e3
  • 5.16e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0001295endometrium
  • UBERON:0000113post-juvenile adult stage
5.22e3
  • 5.22e3
76.48
  • 76.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
7.49e3
  • 7.49e3
66.26
  • 66.26
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.78e3
  • 7.78e3
64.95
  • 64.95
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Mammalia13 species16 genesCompare expression
Amniota15 species18 genesCompare expression
Tetrapoda16 species19 genesCompare expression
Euteleostomi17 species20 genesCompare expression
Bilateria24 species27 genesCompare expression

Orthology information comes from OMA : ENSOANG00000001269.

Cross-references

EnsemblENSOANG00000001269 (VBP1)
HGNCHGNC:12662 (VBP1)
EMBLAAPN01377617
Uniprot/SPTREMBLF7G8T2, F7G8T2_ORNAN

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