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O. cuniculus Gene: SYNC - ENSOCUG00000000943 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000000943
NameSYNC
Descriptionsyncoilin, intermediate filament protein [Source:HGNC Symbol;Acc:HGNC:28897]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)sync1, syncoilin
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
3.58e3
  • 3.58e3
82.56
  • 82.56
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
3.59e3
  • 3.59e3
82.54
  • 82.54
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
6.36e3
  • 6.36e3
69.04
  • 69.04
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.76e3
  • 7.76e3
  • 8.63e3
62.22
  • 62.22
  • 58.01
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
8.61e3
  • 8.61e3
  • 1.28e4
  • 1.29e4
58.09
  • 58.09
  • 37.62
  • 37.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
9.90e3
  • 9.90e3
51.80
  • 51.80
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
  • 1.55e4
45.60
  • 45.60
  • 24.62
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
41.77
  • 41.77
AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
1.23e4
  • 1.23e4
40.29
  • 40.29
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
39.43
  • 39.43
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.26e4
  • 1.26e4
38.44
  • 38.44
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
36.07
  • 36.07
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
35.72
  • 35.72
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.34e4
  • 1.34e4
34.62
  • 34.62
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
1.37e4
  • 1.37e4
33.44
  • 33.44
AEIR
  • AEIR
UBERON:0002168left lung
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
32.90
  • 32.90
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
1.41e4
  • 1.41e4
31.29
  • 31.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000000943.

Cross-references

EnsemblENSOCUG00000000943 (SYNC)
HGNCHGNC:28897 (SYNC)
Uniprot/SPTREMBLG1SEE1, G1SEE1_RABIT

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