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O. cuniculus Gene: COL10A1 - ENSOCUG00000001188 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000001188
NameCOL10A1
Descriptioncollagen, type X, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2185]
OrganismOryctolagus cuniculus (rabbit)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000104life cycle
9.19e3
  • 9.19e3
55.26
  • 55.26
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
9.81e3
  • 9.81e3
52.23
  • 52.23
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
36.47
  • 36.47
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
34.07
  • 34.07
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
1.42e4
  • 1.42e4
31.12
  • 31.12
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
1.42e4
  • 1.42e4
30.84
  • 30.84
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
29.93
  • 29.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.47e4
  • 1.47e4
  • 1.65e4
28.49
  • 28.49
  • 19.62
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.51e4
  • 1.82e4
27.22
  • 27.22
  • 26.29
  • 11.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
25.82
  • 25.82
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.68e4
25.64
  • 25.64
  • 18.46
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
21.78
  • 21.78
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.73e4
  • 1.73e4
15.78
  • 15.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000001188.

Cross-references

EnsemblENSOCUG00000001188 (COL10A1)
HGNCHGNC:2185 (COL10A1)
EMBLAAGW02029300
Uniprot/SPTREMBLG1SEY0, G1SEY0_RABIT

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