O. cuniculus Gene: SPTLC2 - ENSOCUG00000001434 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000001434
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
3.78e3
  • 3.78e3
81.60
  • 81.60
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
3.86e3
  • 3.86e3
81.24
  • 81.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.07e3
  • 4.07e3
  • 6.15e3
  • 6.88e3
80.21
  • 80.21
  • 70.07
  • 66.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
4.20e3
  • 4.20e3
79.56
  • 79.56
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.90e3
  • 5.90e3
  • 9.51e3
71.30
  • 71.30
  • 53.71
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
6.26e3
  • 6.26e3
69.53
  • 69.53
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
6.78e3
  • 6.78e3
67.00
  • 67.00
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
6.95e3
  • 6.95e3
66.16
  • 66.16
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.96e3
  • 6.96e3
  • 7.78e3
66.14
  • 66.14
  • 62.16
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.00e3
  • 7.00e3
  • 7.25e3
65.94
  • 65.94
  • 64.73
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
7.33e3
  • 7.33e3
64.35
  • 64.35
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.81e3
  • 7.81e3
61.98
  • 61.98
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
7.99e3
  • 7.99e3
61.11
  • 61.11
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
8.84e3
  • 8.84e3
56.98
  • 56.98
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
8.85e3
  • 8.85e3
56.92
  • 56.92
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
9.15e3
  • 9.15e3
55.47
  • 55.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000001434.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSOCUG00000001434.

Cross-references

EnsemblENSOCUG00000001434 (SPTLC2)
HGNCHGNC:11278 (SPTLC2)
EMBLAAGW02049168, AAGW02049169
Uniprot/SPTREMBLG1SFF5, G1SFF5_RABIT

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