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O. cuniculus Gene: XRCC1 - ENSOCUG00000005387 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000005387
NameXRCC1
DescriptionX-ray repair complementing defective repair in Chinese hamster cells 1 [Source:HGNC Symbol;Acc:HGNC:12828]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)rcc
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
5.22e3
  • 5.22e3
74.57
  • 74.57
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
5.31e3
  • 5.31e3
74.14
  • 74.14
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
5.96e3
  • 5.96e3
71.00
  • 71.00
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
6.01e3
  • 6.01e3
70.74
  • 70.74
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
6.10e3
  • 6.10e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.14e3
  • 6.14e3
  • 8.53e3
70.10
  • 70.10
  • 58.48
AEIR
  • AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
6.30e3
  • 6.30e3
69.34
  • 69.34
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
6.72e3
  • 6.72e3
  • 7.96e3
  • 8.63e3
67.30
  • 67.30
  • 61.27
  • 58.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
6.83e3
  • 6.83e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.92e3
  • 6.92e3
  • 8.33e3
66.32
  • 66.32
  • 59.46
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
7.58e3
  • 7.58e3
63.11
  • 63.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.63e3
  • 7.63e3
  • 7.90e3
62.89
  • 62.89
  • 61.54
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
7.69e3
  • 7.69e3
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
7.70e3
  • 7.70e3
62.52
  • 62.52
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
7.70e3
  • 7.70e3
62.51
  • 62.51
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
7.92e3
  • 7.92e3
61.44
  • 61.44
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.95e3
  • 7.95e3
61.33
  • 61.33
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.41e3
  • 8.41e3
59.08
  • 59.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000005387.

Cross-references

EnsemblENSOCUG00000005387 (XRCC1)
HGNCHGNC:12828 (XRCC1)
Uniprot/SPTREMBLG1SNU3, G1SNU3_RABIT

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