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O. cuniculus Gene: CCDC28B - ENSOCUG00000007605 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000007605
NameCCDC28B
Descriptioncoiled-coil domain containing 28B [Source:HGNC Symbol;Acc:HGNC:28163]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)mgc1203, rp4-622l5.5
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
1.69e3
  • 1.69e3
91.80
  • 91.80
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.93e3
  • 1.93e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.93e3
  • 1.93e3
90.60
  • 90.60
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
2.37e3
  • 2.37e3
88.46
  • 88.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.60e3
  • 2.60e3
  • 5.76e3
87.34
  • 87.34
  • 71.98
AEIR
  • AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
3.04e3
  • 3.04e3
85.22
  • 85.22
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
3.14e3
  • 3.14e3
  • 4.47e3
  • 5.95e3
84.71
  • 84.71
  • 78.23
  • 71.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
3.36e3
  • 3.36e3
83.65
  • 83.65
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
3.86e3
  • 3.86e3
81.23
  • 81.23
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
4.02e3
  • 4.02e3
80.46
  • 80.46
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
4.08e3
  • 4.08e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
4.19e3
  • 4.19e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
4.87e3
  • 4.87e3
76.30
  • 76.30
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
5.25e3
  • 5.25e3
74.43
  • 74.43
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
5.79e3
  • 5.79e3
71.84
  • 71.84
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.88e3
  • 5.88e3
  • 7.38e3
71.39
  • 71.39
  • 64.08
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
7.71e3
  • 7.71e3
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
8.68e3
  • 8.68e3
57.76
  • 57.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
1.01e4
  • 1.01e4
50.99
  • 50.99
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000007605.

Cross-references

EnsemblENSOCUG00000007605 (CCDC28B)
HGNCHGNC:28163 (CCDC28B)
Uniprot/SPTREMBLG1STE6, G1STE6_RABIT

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