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O. cuniculus Gene: OPA3 - ENSOCUG00000007949 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000007949
NameOPA3
Descriptionoptic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) [Source:HGNC Symbol;Acc:HGNC:8142]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)flj22187, mga3
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000992female gonad
  • UBERON:0000104life cycle
913
  • 913
95.56
  • 95.56
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.47e3
  • 2.47e3
  • 3.72e3
87.99
  • 87.99
  • 81.92
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
2.90e3
  • 2.90e3
85.89
  • 85.89
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
2.90e3
  • 2.90e3
85.87
  • 85.87
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.33e3
  • 3.33e3
  • 9.37e3
83.82
  • 83.82
  • 54.40
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
3.51e3
  • 3.51e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.61e3
  • 3.61e3
82.42
  • 82.42
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
4.10e3
  • 4.10e3
80.03
  • 80.03
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
4.44e3
  • 4.44e3
78.40
  • 78.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.49e3
  • 4.49e3
  • 6.53e3
78.16
  • 78.16
  • 68.21
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
5.20e3
  • 5.20e3
  • 8.46e3
  • 8.92e3
74.68
  • 74.68
  • 58.85
  • 56.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
5.33e3
  • 5.33e3
74.05
  • 74.05
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.55e3
  • 5.55e3
73.00
  • 73.00
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.71e3
  • 5.71e3
72.24
  • 72.24
AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
6.59e3
  • 6.59e3
67.93
  • 67.93
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
6.79e3
  • 6.79e3
66.95
  • 66.95
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
7.00e3
  • 7.00e3
65.91
  • 65.91
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
7.15e3
  • 7.15e3
65.22
  • 65.22
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
57.56
  • 57.56
AEIR
  • AEIR
UBERON:0002168left lung
  • UBERON:0000068embryo stage
8.73e3
  • 8.73e3
57.53
  • 57.53
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
9.91e3
  • 9.91e3
51.77
  • 51.77
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires2 species2 genesCompare expression
Euarchontoglires5 species5 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Theria10 species10 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000007949.

Cross-references

EnsemblENSOCUG00000007949 (OPA3)
HGNCHGNC:8142 (OPA3)
Uniprot/SPTREMBLG1SU50, G1SU50_RABIT

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