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O. cuniculus Gene: SYNPO2 - ENSOCUG00000008953 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000008953
NameSYNPO2
Descriptionsynaptopodin 2 [Source:HGNC Symbol;Acc:HGNC:17732]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)myopodin
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
721
  • 721
96.50
  • 96.50
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
723
  • 723
96.49
  • 96.49
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
1.25e3
  • 1.25e3
93.93
  • 93.93
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
2.30e3
  • 2.30e3
  • 5.96e3
  • 7.28e3
88.81
  • 88.81
  • 71.01
  • 64.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
2.50e3
  • 2.50e3
87.82
  • 87.82
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.89e3
  • 2.89e3
85.93
  • 85.93
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.53e3
  • 3.53e3
  • 3.95e3
82.81
  • 82.81
  • 80.78
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
4.62e3
  • 4.62e3
77.53
  • 77.53
AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
7.65e3
  • 7.65e3
62.76
  • 62.76
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
9.05e3
  • 9.05e3
  • 9.66e3
55.96
  • 55.96
  • 52.97
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
9.09e3
  • 9.09e3
55.74
  • 55.74
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
9.71e3
  • 9.71e3
52.73
  • 52.73
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
1.02e4
  • 1.02e4
50.41
  • 50.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
  • 1.12e4
49.87
  • 49.87
  • 45.33
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
1.11e4
  • 1.11e4
46.02
  • 46.02
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
1.20e4
  • 1.20e4
41.43
  • 41.43
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
39.69
  • 39.69
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
34.59
  • 34.59
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000008953.

Cross-references

EnsemblENSOCUG00000008953 (SYNPO2)
HGNCHGNC:17732 (SYNPO2)
EMBLAAGW02053539, AAGW02053540
Uniprot/SPTREMBLG1SW82, G1SW82_RABIT

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