O. cuniculus Gene: SLC11A1 - ENSOCUG00000016027 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000016027
NameSLC11A1
Descriptionsolute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 [Source:HGNC Symbol;Acc:HGNC:10907]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)lsh, nramp, nramp1
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0000104life cycle
3.35e3
  • 3.35e3
83.71
  • 83.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
8.98e3
  • 8.98e3
56.30
  • 56.30
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.00e4
  • 1.00e4
  • 1.14e4
51.14
  • 51.14
  • 44.55
AEIR
  • AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
48.43
  • 48.43
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
39.27
  • 39.27
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
39.16
  • 39.16
AEIR
  • AEIR
UBERON:0002168left lung
  • UBERON:0000068embryo stage
1.28e4
  • 1.28e4
37.62
  • 37.62
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
1.29e4
  • 1.29e4
37.20
  • 37.20
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.39e4
35.37
  • 35.37
  • 32.41
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.35e4
  • 1.35e4
34.09
  • 34.09
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
1.38e4
  • 1.38e4
32.67
  • 32.67
AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
1.45e4
  • 1.45e4
29.33
  • 29.33
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.60e4
  • 1.60e4
22.32
  • 22.32
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
21.91
  • 21.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000016027.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa1 geneCompare expression

Paralogy information comes from OMA : ENSOCUG00000016027.

Cross-references

EnsemblENSOCUG00000016027 (SLC11A1)
HGNCHGNC:10907 (SLC11A1)
EMBLAAGW02042722
Uniprot/SPTREMBLG1TAR1, G1TAR1_RABIT

Do not show this banner again