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O. cuniculus Gene: PCMTD1 - ENSOCUG00000016958 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000016958
NamePCMTD1
Descriptionprotein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30483]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)flj10883
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002168left lung
  • UBERON:0000068embryo stage
1.17e3
  • 1.17e3
94.31
  • 94.31
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
1.34e3
  • 1.34e3
93.50
  • 93.50
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.35e3
  • 1.35e3
  • 1.84e3
  • 2.89e3
93.43
  • 93.43
  • 91.07
  • 85.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.51e3
  • 1.51e3
  • 2.64e3
92.65
  • 92.65
  • 87.17
AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.78e3
  • 1.78e3
91.35
  • 91.35
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.78e3
  • 1.78e3
91.35
  • 91.35
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
2.55e3
  • 2.55e3
87.61
  • 87.61
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0000104life cycle
2.73e3
  • 2.73e3
86.71
  • 86.71
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
2.80e3
  • 2.80e3
86.40
  • 86.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000104life cycle
2.83e3
  • 2.83e3
86.24
  • 86.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.93e3
  • 2.93e3
  • 4.21e3
85.75
  • 85.75
  • 79.52
AEIR
  • AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
3.01e3
  • 3.01e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.38e3
  • 3.38e3
83.55
  • 83.55
AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
3.39e3
  • 3.39e3
83.52
  • 83.52
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
3.45e3
  • 3.45e3
83.22
  • 83.22
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
8.16e3
  • 8.16e3
60.28
  • 60.28
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
9.34e3
  • 9.34e3
  • 9.37e3
54.55
  • 54.55
  • 54.41
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000016958.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSOCUG00000016958.

Cross-references

EnsemblENSOCUG00000016958 (PCMTD1)
HGNCHGNC:30483 (PCMTD1)
EMBLAAGW02047396, AAGW02047397
Uniprot/SPTREMBLG1TCP9, G1TCP9_RABIT

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