O. cuniculus Gene: PTX4 - ENSOCUG00000027299 - Oryctolagus cuniculus (rabbit)

General information

Ensembl IDENSOCUG00000027299
NamePTX4
Descriptionpentraxin 4 [Source:HGNC Symbol;Acc:HGNC:14171]
OrganismOryctolagus cuniculus (rabbit)
Synonym(s)c16orf38
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
46.28
  • 46.28
AEIR
  • AEIR
UBERON:0008952upper lobe of left lung
  • UBERON:0000068embryo stage
1.17e4
  • 1.17e4
42.96
  • 42.96
AEIR
  • AEIR
UBERON:0001068skin of back
  • UBERON:0000112sexually immature stage
1.25e4
  • 1.25e4
39.18
  • 39.18
AEIR
  • AEIR
UBERON:0001135smooth muscle tissue
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
36.15
  • 36.15
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
36.14
  • 36.14
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
  • 1.40e4
35.31
  • 35.31
  • 31.66
AEIR
  • AEIR
  • AEIR
UBERON:0015790autopod skin
  • UBERON:0000112sexually immature stage
1.38e4
  • 1.38e4
33.08
  • 33.08
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
1.39e4
  • 1.39e4
32.18
  • 32.18
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
1.41e4
  • 1.41e4
31.60
  • 31.60
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.42e4
  • 1.42e4
  • 1.49e4
  • 1.54e4
31.08
  • 31.08
  • 27.72
  • 24.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
30.78
  • 30.78
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
30.75
  • 30.75
AEIR
  • AEIR
UBERON:0000947aorta
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
29.30
  • 29.30
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
27.79
  • 27.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.58e4
  • 1.58e4
  • 1.96e4
23.08
  • 23.08
  • 4.76
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression

Orthology information comes from OMA : ENSOCUG00000027299.

Cross-references

EnsemblENSOCUG00000027299 (PTX4)
HGNCHGNC:14171 (PTX4)
Uniprot/SPTREMBLG1TM96, G1TM96_RABIT, G1U615, G1U615_RABIT

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