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P. troglodytes Gene: TRNAU1AP - ENSPTRG00000000434 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000000434
NameTRNAU1AP
DescriptiontRNA selenocysteine 1 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:30813]
OrganismPan troglodytes (chimpanzee)
Synonym(s)flj20503, secp43, trspap1
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.97e3
  • 1.97e3
92.08
  • 92.08
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.67e3
  • 2.67e3
  • 3.39e3
  • 4.11e3
89.26
  • 89.26
  • 86.38
  • 83.44
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
2.70e3
  • 2.70e3
  • 2.81e3
  • 3.88e3
  • 6.09e3
89.14
  • 89.14
  • 88.68
  • 84.39
  • 75.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.79e3
  • 2.79e3
  • 4.21e3
  • 4.55e3
88.76
  • 88.76
  • 83.05
  • 81.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
3.04e3
  • 3.04e3
87.77
  • 87.77
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.05e3
  • 3.05e3
  • 3.22e3
  • 3.34e3
  • 4.12e3
  • 5.37e3
  • 5.94e3
87.71
  • 87.71
  • 87.04
  • 86.54
  • 83.43
  • 78.38
  • 76.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.22e3
  • 3.22e3
  • 4.10e3
  • 6.40e3
  • 9.96e3
87.05
  • 87.05
  • 83.50
  • 74.23
  • 59.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.46e3
  • 3.46e3
  • 8.27e3
86.06
  • 86.06
  • 66.72
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.55e3
  • 3.55e3
  • 3.64e3
  • 4.99e3
  • 5.61e3
  • 6.06e3
85.72
  • 85.72
  • 85.36
  • 79.91
  • 77.43
  • 75.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
3.65e3
  • 3.65e3
85.31
  • 85.31
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
3.66e3
  • 3.66e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
4.22e3
  • 4.22e3
83.01
  • 83.01
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.58e3
  • 5.58e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.63e3
  • 5.63e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
5.79e3
  • 5.79e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
5.93e3
  • 5.93e3
  • 7.75e3
76.13
  • 76.13
  • 68.80
AEIR
  • AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.95e3
  • 5.95e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
5.97e3
  • 5.97e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
6.28e3
  • 6.28e3
74.74
  • 74.74
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
6.39e3
  • 6.39e3
74.29
  • 74.29
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
6.58e3
  • 6.58e3
73.53
  • 73.53
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
6.98e3
  • 6.98e3
71.89
  • 71.89
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
7.77e3
  • 7.77e3
68.71
  • 68.71
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
8.29e3
  • 8.29e3
66.62
  • 66.62
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species8 genesCompare expression
Boreoeutheria13 species14 genesCompare expression
Theria14 species15 genesCompare expression
Mammalia15 species16 genesCompare expression
Amniota17 species18 genesCompare expression
Tetrapoda18 species19 genesCompare expression
Euteleostomi19 species20 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000000434.

Cross-references

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