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P. troglodytes Gene: RRNAD1 - ENSPTRG00000001472 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000001472
NameRRNAD1
Descriptionribosomal RNA adenine dimethylase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24273]
OrganismPan troglodytes (chimpanzee)
Synonym(s)c1orf66, cgi-41
Orthologs(s)27 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.90e3
  • 5.90e3
  • 7.11e3
  • 7.30e3
  • 8.75e3
76.27
  • 76.27
  • 71.38
  • 70.62
  • 64.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.04e3
  • 6.04e3
  • 6.21e3
75.70
  • 75.70
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.07e3
  • 6.07e3
  • 6.82e3
  • 7.60e3
75.56
  • 75.56
  • 72.54
  • 69.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
6.25e3
  • 6.25e3
74.84
  • 74.84
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
6.56e3
  • 6.56e3
  • 7.06e3
  • 7.11e3
  • 8.35e3
  • 9.09e3
73.58
  • 73.58
  • 71.59
  • 71.40
  • 66.37
  • 63.39
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
7.30e3
  • 7.30e3
  • 7.72e3
  • 1.03e4
70.62
  • 70.62
  • 68.91
  • 58.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
7.39e3
  • 7.39e3
  • 7.52e3
  • 7.94e3
  • 8.64e3
  • 9.32e3
  • 9.37e3
70.26
  • 70.26
  • 69.73
  • 68.02
  • 65.21
  • 62.47
  • 62.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
7.42e3
  • 7.42e3
70.15
  • 70.15
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.75e3
  • 7.75e3
  • 9.58e3
68.79
  • 68.79
  • 61.45
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
8.20e3
  • 8.20e3
  • 8.58e3
  • 9.46e3
  • 1.16e4
66.98
  • 66.98
  • 65.45
  • 61.90
  • 53.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
8.26e3
  • 8.26e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
8.28e3
  • 8.28e3
66.68
  • 66.68
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
8.86e3
  • 8.86e3
64.36
  • 64.36
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
9.21e3
  • 9.21e3
62.91
  • 62.91
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
9.63e3
  • 9.63e3
61.25
  • 61.25
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
59.25
  • 59.25
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
58.82
  • 58.82
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.07e4
  • 1.07e4
56.78
  • 56.78
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
54.29
  • 54.29
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.86
  • 51.86
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
48.84
  • 48.84
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
45.99
  • 45.99
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
38.50
  • 38.50
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000001472.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSPTRG00000001472.

Cross-references

EnsemblENSPTRG00000001472 (RRNAD1)
HGNCHGNC:24273 (RRNAD1)
EMBLAACZ03005083, AACZ03005084, AACZ03005085
Uniprot/SPTREMBLH2QZS8, H2QZS8_PANTR

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