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P. troglodytes Gene: PGBD2 - ENSPTRG00000002227 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000002227
NamePGBD2
DescriptionpiggyBac transposable element derived 2 [Source:HGNC Symbol;Acc:HGNC:19399]
OrganismPan troglodytes (chimpanzee)
Orthologs(s)10 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
3.44e3
  • 3.44e3
86.15
  • 86.15
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.90e3
  • 3.90e3
84.31
  • 84.31
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.03e3
  • 4.03e3
  • 4.49e3
  • 5.44e3
83.77
  • 83.77
  • 81.92
  • 78.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.88e3
  • 4.88e3
  • 5.37e3
  • 6.35e3
  • 7.12e3
80.35
  • 80.35
  • 78.39
  • 74.44
  • 71.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.55e3
  • 5.55e3
77.64
  • 77.64
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
5.66e3
  • 5.66e3
  • 7.03e3
  • 7.32e3
  • 7.77e3
77.21
  • 77.21
  • 71.69
  • 70.54
  • 68.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
5.68e3
  • 5.68e3
77.14
  • 77.14
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
5.86e3
  • 5.86e3
76.43
  • 76.43
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
6.02e3
  • 6.02e3
  • 6.92e3
  • 7.44e3
  • 7.86e3
  • 7.94e3
75.79
  • 75.79
  • 72.13
  • 70.05
  • 68.35
  • 68.05
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.05e3
  • 6.05e3
  • 6.10e3
  • 7.66e3
75.65
  • 75.65
  • 75.43
  • 69.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
6.08e3
  • 6.08e3
  • 6.59e3
  • 6.86e3
  • 7.43e3
  • 7.46e3
  • 8.95e3
75.53
  • 75.53
  • 73.46
  • 72.40
  • 70.09
  • 69.98
  • 63.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
6.40e3
  • 6.40e3
  • 7.43e3
74.24
  • 74.24
  • 70.11
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.81e3
  • 6.81e3
  • 6.88e3
72.59
  • 72.59
  • 72.32
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
6.84e3
  • 6.84e3
72.49
  • 72.49
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
6.90e3
  • 6.90e3
72.24
  • 72.24
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
7.26e3
  • 7.26e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
8.05e3
  • 8.05e3
67.61
  • 67.61
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
8.09e3
  • 8.09e3
67.44
  • 67.44
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
8.46e3
  • 8.46e3
65.94
  • 65.94
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
8.74e3
  • 8.74e3
64.83
  • 64.83
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
9.78e3
  • 9.78e3
60.63
  • 60.63
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
48.43
  • 48.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires5 species5 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Theria10 species10 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000002227.

Cross-references

EnsemblENSPTRG00000002227 (PGBD2)
HGNCHGNC:19399 (PGBD2)
EMBLGABD01006865, GABF01004510
Uniprot/SPTREMBLH2Q1I5, H2Q1I5_PANTR

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