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P. troglodytes Gene: CHID1 - ENSPTRG00000003143 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000003143
NameCHID1
Descriptionchitinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28474]
OrganismPan troglodytes (chimpanzee)
Synonym(s)flj42707, mgc3234
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.65e3
  • 1.65e3
  • 2.55e3
  • 2.65e3
  • 4.05e3
93.35
  • 93.35
  • 89.75
  • 89.35
  • 83.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
2.66e3
  • 2.66e3
  • 3.27e3
  • 3.35e3
  • 3.45e3
  • 5.60e3
89.28
  • 89.28
  • 86.84
  • 86.52
  • 86.10
  • 77.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
3.66e3
  • 3.66e3
  • 5.20e3
85.28
  • 85.28
  • 79.07
AEIR
  • AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
3.68e3
  • 3.68e3
85.20
  • 85.20
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
3.79e3
  • 3.79e3
  • 4.86e3
  • 6.21e3
84.76
  • 84.76
  • 80.43
  • 75.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
3.81e3
  • 3.81e3
  • 4.41e3
  • 4.63e3
  • 4.71e3
  • 5.56e3
  • 5.76e3
84.67
  • 84.67
  • 82.26
  • 81.38
  • 81.05
  • 77.61
  • 76.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.01e3
  • 4.01e3
  • 7.24e3
83.85
  • 83.85
  • 70.86
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
4.68e3
  • 4.68e3
  • 4.94e3
  • 7.91e3
81.17
  • 81.17
  • 80.14
  • 68.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.90e3
  • 4.90e3
  • 5.18e3
  • 6.51e3
  • 8.09e3
80.29
  • 80.29
  • 79.16
  • 73.78
  • 67.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.10e3
  • 5.10e3
79.48
  • 79.48
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
5.72e3
  • 5.72e3
76.98
  • 76.98
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
5.73e3
  • 5.73e3
76.96
  • 76.96
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
5.79e3
  • 5.79e3
76.68
  • 76.68
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
6.90e3
  • 6.90e3
72.24
  • 72.24
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
6.95e3
  • 6.95e3
72.02
  • 72.02
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
8.58e3
  • 8.58e3
65.46
  • 65.46
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
9.30e3
  • 9.30e3
62.57
  • 62.57
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
56.52
  • 56.52
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
55.05
  • 55.05
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
53.56
  • 53.56
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.10
  • 51.10
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
49.52
  • 49.52
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.28e4
  • 1.28e4
48.47
  • 48.47
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Mammalia12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000003143.

Cross-references

EnsemblENSPTRG00000003143 (CHID1)
HGNCHGNC:28474 (CHID1)
EMBLAACZ03083544, AACZ03083545
Uniprot/SPTREMBLH2Q2W4, H2Q2W4_PANTR

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