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P. troglodytes Gene: TPH1 - ENSPTRG00000003409 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000003409
NameTPH1
Descriptiontryptophan hydroxylase 1 [Source:HGNC Symbol;Acc:HGNC:12008]
OrganismPan troglodytes (chimpanzee)
Synonym(s)tph, tprh
Orthologs(s)24 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
6.83e3
  • 6.83e3
72.53
  • 72.53
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
45.04
  • 45.04
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.37e4
  • 1.37e4
44.86
  • 44.86
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
  • 1.44e4
  • 1.61e4
43.52
  • 43.52
  • 41.94
  • 34.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
43.32
  • 43.32
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.50e4
  • 1.66e4
  • 1.70e4
  • 1.76e4
42.60
  • 42.60
  • 39.64
  • 33.14
  • 31.68
  • 29.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
  • 1.46e4
  • 1.56e4
  • 1.70e4
41.82
  • 41.82
  • 41.04
  • 37.21
  • 31.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
  • 1.47e4
  • 1.52e4
  • 1.56e4
  • 1.57e4
  • 1.81e4
41.42
  • 41.42
  • 40.66
  • 38.98
  • 37.18
  • 36.76
  • 27.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
  • 1.53e4
  • 1.69e4
40.98
  • 40.98
  • 38.59
  • 31.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
40.56
  • 40.56
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
1.50e4
  • 1.50e4
39.53
  • 39.53
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
39.01
  • 39.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
1.52e4
  • 1.52e4
38.89
  • 38.89
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
35.93
  • 35.93
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000003409.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000003409.

Cross-references

EnsemblENSPTRG00000003409 (TPH1)
HGNCHGNC:12008 (TPH1)
EMBLAACZ03078904, AACZ03078905
Uniprot/SPTREMBLH2Q388, H2Q388_PANTR

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