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P. troglodytes Gene: PDGFD - ENSPTRG00000004227 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000004227
NamePDGFD
Descriptionplatelet derived growth factor D [Source:HGNC Symbol;Acc:HGNC:30620]
OrganismPan troglodytes (chimpanzee)
Synonym(s)iegf, mstp036, scdgf-b
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0018241prime adult stage
5.39e3
  • 5.39e3
78.31
  • 78.31
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
5.92e3
  • 5.92e3
76.17
  • 76.17
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
6.93e3
  • 6.93e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
7.21e3
  • 7.21e3
  • 7.99e3
  • 1.03e4
  • 1.13e4
70.97
  • 70.97
  • 67.85
  • 58.56
  • 54.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
7.27e3
  • 7.27e3
70.75
  • 70.75
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
7.82e3
  • 7.82e3
68.54
  • 68.54
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
8.78e3
  • 8.78e3
  • 1.25e4
64.67
  • 64.67
  • 49.80
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
9.58e3
  • 9.58e3
  • 1.09e4
  • 1.31e4
  • 1.47e4
61.44
  • 61.44
  • 56.19
  • 47.13
  • 40.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
9.93e3
  • 9.93e3
60.04
  • 60.04
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
55.02
  • 55.02
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.72
  • 51.72
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.30e4
  • 1.34e4
50.42
  • 50.42
  • 49.32
  • 48.39
  • 47.86
  • 46.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
50.34
  • 50.34
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
50.01
  • 50.01
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
1.27e4
  • 1.27e4
  • 1.29e4
  • 1.31e4
  • 1.34e4
  • 1.43e4
  • 1.60e4
48.92
  • 48.92
  • 48.10
  • 47.41
  • 46.20
  • 42.44
  • 35.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
1.28e4
  • 1.28e4
48.35
  • 48.35
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
45.79
  • 45.79
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
  • 1.52e4
43.94
  • 43.94
  • 38.82
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
43.76
  • 43.76
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
42.37
  • 42.37
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.44e4
  • 1.44e4
  • 1.52e4
42.14
  • 42.14
  • 38.81
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.44e4
  • 1.44e4
  • 1.65e4
41.99
  • 41.99
  • 33.56
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000004227.

Cross-references

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