P. troglodytes Gene: PYM1 - ENSPTRG00000005067 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000005067
NamePYM1
DescriptionPYM homolog 1, exon junction complex associated factor [Source:HGNC Symbol;Acc:HGNC:30258]
OrganismPan troglodytes (chimpanzee)
Synonym(s)pym, wibg
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
2.26e3
  • 2.26e3
  • 2.41e3
  • 3.34e3
  • 5.85e3
90.90
  • 90.90
  • 90.29
  • 86.57
  • 76.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.16e3
  • 3.16e3
  • 3.80e3
  • 4.97e3
  • 5.05e3
  • 6.73e3
87.27
  • 87.27
  • 84.70
  • 79.98
  • 79.67
  • 72.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
3.26e3
  • 3.26e3
  • 4.97e3
86.90
  • 86.90
  • 79.98
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.69e3
  • 3.69e3
  • 4.21e3
  • 5.26e3
  • 5.32e3
  • 5.95e3
  • 6.60e3
85.15
  • 85.15
  • 83.07
  • 78.83
  • 78.61
  • 76.03
  • 73.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.31e3
  • 4.31e3
  • 5.63e3
  • 6.12e3
  • 1.01e4
82.64
  • 82.64
  • 77.33
  • 75.39
  • 59.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
4.33e3
  • 4.33e3
82.58
  • 82.58
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.94e3
  • 4.94e3
  • 9.61e3
80.11
  • 80.11
  • 61.33
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.15e3
  • 5.15e3
79.27
  • 79.27
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.58e3
  • 5.58e3
  • 6.22e3
  • 6.79e3
77.54
  • 77.54
  • 74.97
  • 72.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
5.88e3
  • 5.88e3
76.33
  • 76.33
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
6.40e3
  • 6.40e3
74.25
  • 74.25
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
6.54e3
  • 6.54e3
  • 6.61e3
  • 9.14e3
73.69
  • 73.69
  • 73.40
  • 63.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
6.78e3
  • 6.78e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
6.83e3
  • 6.83e3
72.50
  • 72.50
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
9.56e3
  • 9.56e3
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
57.36
  • 57.36
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
53.22
  • 53.22
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
49.92
  • 49.92
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
48.23
  • 48.23
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
46.26
  • 46.26
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
41.33
  • 41.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae1 species1 geneCompare expression
Catarrhini2 species2 genesCompare expression
Euarchontoglires6 species6 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression
Bilateria16 species16 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000005067.

Cross-references

EnsemblENSPTRG00000005067 (PYM1)
HGNCHGNC:30258 (PYM1)
EMBLAACZ03086104, AACZ03086105
Uniprot/SPTREMBLH2RBK0, H2RBK0_PANTR

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