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P. troglodytes Gene: SDR39U1 - ENSPTRG00000006222 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000006222
NameSDR39U1
Descriptionshort chain dehydrogenase/reductase family 39U, member 1 [Source:HGNC Symbol;Acc:HGNC:20275]
OrganismPan troglodytes (chimpanzee)
Synonym(s)c14orf124, hcdi
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.16e3
  • 1.16e3
  • 1.39e3
  • 1.68e3
95.32
  • 95.32
  • 94.41
  • 93.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.34e3
  • 1.34e3
  • 2.04e3
  • 2.30e3
  • 2.79e3
  • 3.33e3
94.63
  • 94.63
  • 91.78
  • 90.76
  • 88.77
  • 86.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.73e3
  • 1.73e3
  • 1.77e3
  • 2.33e3
  • 2.55e3
  • 2.66e3
  • 3.05e3
93.03
  • 93.03
  • 92.88
  • 90.63
  • 89.76
  • 89.28
  • 87.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
2.03e3
  • 2.03e3
  • 3.65e3
  • 5.00e3
91.83
  • 91.83
  • 85.30
  • 79.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.28e3
  • 2.28e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
3.33e3
  • 3.33e3
86.61
  • 86.61
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
3.79e3
  • 3.79e3
84.74
  • 84.74
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.87e3
  • 3.87e3
  • 4.06e3
  • 5.94e3
  • 8.28e3
84.42
  • 84.42
  • 83.64
  • 76.08
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.24e3
  • 4.24e3
  • 9.20e3
82.92
  • 82.92
  • 62.98
AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
4.68e3
  • 4.68e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
5.23e3
  • 5.23e3
78.94
  • 78.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.40e3
  • 5.40e3
  • 6.24e3
  • 6.79e3
  • 9.04e3
78.28
  • 78.28
  • 74.87
  • 72.66
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
7.39e3
  • 7.39e3
  • 8.45e3
70.25
  • 70.25
  • 65.97
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
9.90e3
  • 9.90e3
60.13
  • 60.13
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
59.55
  • 59.55
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
52.90
  • 52.90
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.18e4
  • 1.18e4
52.39
  • 52.39
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.31e4
  • 1.31e4
47.09
  • 47.09
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
46.00
  • 46.00
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.47e4
  • 1.47e4
40.68
  • 40.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000006222.

Cross-references

EnsemblENSPTRG00000006222 (SDR39U1)
HGNCHGNC:20275 (SDR39U1)
EMBLAACZ03095453, AACZ03095454
Uniprot/SPTREMBLH2R9E2, H2R9E2_PANTR

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