P. troglodytes Gene: SPTLC2 - ENSPTRG00000006584 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000006584
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismPan troglodytes (chimpanzee)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a, nol9
Orthologs(s)27 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.68e3
  • 1.68e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
2.10e3
  • 2.10e3
91.54
  • 91.54
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
2.41e3
  • 2.41e3
90.31
  • 90.31
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
3.80e3
  • 3.80e3
84.71
  • 84.71
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
3.90e3
  • 3.90e3
84.29
  • 84.29
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
4.18e3
  • 4.18e3
83.18
  • 83.18
AEIR
  • AEIR
UBERON:0000956cerebral cortex
  • UBERON:0000104life cycle
4.82e3
  • 4.82e3
80.61
  • 80.61
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
5.29e3
  • 5.29e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
5.60e3
  • 5.60e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.81e3
  • 5.81e3
  • 5.92e3
76.61
  • 76.61
  • 76.16
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.83e3
  • 5.83e3
  • 7.62e3
  • 8.13e3
  • 8.71e3
76.55
  • 76.55
  • 69.33
  • 67.27
  • 64.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
6.63e3
  • 6.63e3
  • 8.08e3
  • 8.47e3
73.32
  • 73.32
  • 67.50
  • 65.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
6.70e3
  • 6.70e3
  • 9.22e3
73.04
  • 73.04
  • 62.90
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
6.82e3
  • 6.82e3
  • 6.85e3
  • 7.01e3
  • 8.89e3
72.57
  • 72.57
  • 72.45
  • 71.79
  • 64.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
6.93e3
  • 6.93e3
72.09
  • 72.09
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
7.00e3
  • 7.00e3
  • 8.21e3
  • 8.56e3
  • 1.03e4
  • 1.06e4
  • 1.07e4
71.84
  • 71.84
  • 66.95
  • 65.55
  • 58.35
  • 57.48
  • 56.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
7.68e3
  • 7.68e3
69.09
  • 69.09
AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
7.91e3
  • 7.91e3
  • 9.98e3
  • 1.07e4
  • 1.15e4
  • 1.26e4
68.14
  • 68.14
  • 59.84
  • 56.79
  • 53.86
  • 49.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
8.31e3
  • 8.31e3
66.56
  • 66.56
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
8.34e3
  • 8.34e3
66.41
  • 66.41
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
8.43e3
  • 8.43e3
66.07
  • 66.07
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
9.98e3
  • 9.98e3
59.84
  • 59.84
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
1.00e4
  • 1.00e4
  • 1.08e4
  • 1.14e4
59.69
  • 59.69
  • 56.47
  • 54.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
  • 1.23e4
58.81
  • 58.81
  • 50.49
AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
1.07e4
  • 1.07e4
57.08
  • 57.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000006584.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota2 genesCompare expression

Paralogy information comes from OMA : ENSPTRG00000006584.

Cross-references

Do not show this banner again