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P. troglodytes Gene: LRRC59 - ENSPTRG00000009398 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000009398
NameLRRC59
Descriptionleucine rich repeat containing 59 [Source:HGNC Symbol;Acc:HGNC:28817]
OrganismPan troglodytes (chimpanzee)
Synonym(s)flj21675, pro1855
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
846
  • 846
  • 1.80e3
  • 2.67e3
  • 4.47e3
96.60
  • 96.60
  • 92.74
  • 89.26
  • 82.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
1.14e3
  • 1.14e3
95.43
  • 95.43
AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
2.44e3
  • 2.44e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
2.57e3
  • 2.57e3
89.67
  • 89.67
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
2.65e3
  • 2.65e3
89.35
  • 89.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
2.67e3
  • 2.67e3
  • 4.51e3
89.24
  • 89.24
  • 81.84
AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.02e3
  • 3.02e3
  • 3.10e3
  • 3.14e3
  • 3.15e3
  • 3.66e3
87.83
  • 87.83
  • 87.51
  • 87.37
  • 87.33
  • 85.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0007222late adult stage
3.06e3
  • 3.06e3
  • 3.39e3
  • 3.47e3
  • 3.48e3
  • 3.93e3
  • 4.27e3
87.70
  • 87.70
  • 86.35
  • 86.04
  • 85.98
  • 84.17
  • 82.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
3.07e3
  • 3.07e3
  • 4.73e3
  • 4.84e3
87.65
  • 87.65
  • 80.96
  • 80.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018685nursing stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
3.15e3
  • 3.15e3
  • 3.46e3
  • 4.27e3
  • 5.48e3
87.34
  • 87.34
  • 86.09
  • 82.82
  • 77.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.17e3
  • 3.17e3
  • 6.21e3
87.25
  • 87.25
  • 74.99
AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
3.57e3
  • 3.57e3
85.65
  • 85.65
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
3.78e3
  • 3.78e3
84.81
  • 84.81
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
4.19e3
  • 4.19e3
  • 4.53e3
  • 5.24e3
83.15
  • 83.15
  • 81.76
  • 78.90
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
5.71e3
  • 5.71e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
5.77e3
  • 5.77e3
76.78
  • 76.78
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
5.78e3
  • 5.78e3
76.75
  • 76.75
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
6.64e3
  • 6.64e3
73.29
  • 73.29
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
6.73e3
  • 6.73e3
72.93
  • 72.93
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
6.88e3
  • 6.88e3
72.32
  • 72.32
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
7.41e3
  • 7.41e3
70.17
  • 70.17
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
7.45e3
  • 7.45e3
70.01
  • 70.01
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
7.84e3
  • 7.84e3
68.44
  • 68.44
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000009398.

Cross-references

EnsemblENSPTRG00000009398 (LRRC59)
HGNCHGNC:28817 (LRRC59)
EMBLAACZ03107829, GABC01003883, GABE01009502
Uniprot/SPTREMBLH2QDF0, H2QDF0_PANTR

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