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P. troglodytes Gene: XRCC1 - ENSPTRG00000011084 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000011084
NameXRCC1
DescriptionX-ray repair complementing defective repair in Chinese hamster cells 1 [Source:HGNC Symbol;Acc:HGNC:12828]
OrganismPan troglodytes (chimpanzee)
Synonym(s)rcc
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
2.50e3
  • 2.50e3
  • 4.84e3
89.94
  • 89.94
  • 80.53
AEIR
  • AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.69e3
  • 3.69e3
  • 3.82e3
  • 4.97e3
85.15
  • 85.15
  • 84.63
  • 79.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
3.87e3
  • 3.87e3
  • 4.09e3
  • 4.78e3
  • 5.00e3
  • 6.35e3
84.43
  • 84.43
  • 83.52
  • 80.76
  • 79.88
  • 74.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.04e3
  • 4.04e3
  • 7.05e3
  • 7.92e3
  • 9.39e3
83.76
  • 83.76
  • 71.62
  • 68.11
  • 62.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
4.69e3
  • 4.69e3
  • 5.07e3
  • 6.57e3
81.13
  • 81.13
  • 79.59
  • 73.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
4.95e3
  • 4.95e3
  • 5.15e3
  • 5.23e3
  • 5.59e3
  • 5.87e3
  • 6.25e3
80.08
  • 80.08
  • 79.26
  • 78.93
  • 77.52
  • 76.36
  • 74.84
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
5.58e3
  • 5.58e3
  • 8.65e3
77.54
  • 77.54
  • 65.18
AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
5.59e3
  • 5.59e3
77.49
  • 77.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
5.67e3
  • 5.67e3
  • 6.28e3
  • 7.43e3
  • 9.49e3
77.17
  • 77.17
  • 74.73
  • 70.08
  • 61.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
5.78e3
  • 5.78e3
76.72
  • 76.72
AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
5.80e3
  • 5.80e3
76.67
  • 76.67
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
5.87e3
  • 5.87e3
76.37
  • 76.37
AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
6.38e3
  • 6.38e3
74.31
  • 74.31
AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
6.61e3
  • 6.61e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
7.99e3
  • 7.99e3
67.86
  • 67.86
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
9.51e3
  • 9.51e3
61.74
  • 61.74
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.03e4
  • 1.03e4
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
1.08e4
  • 1.08e4
56.57
  • 56.57
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
53.52
  • 53.52
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
52.07
  • 52.07
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
51.90
  • 51.90
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.64
  • 51.64
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
51.22
  • 51.22
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000011084.

Cross-references

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