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P. troglodytes Gene: JOSD2 - ENSPTRG00000011345 - Pan troglodytes (chimpanzee)

General information

Ensembl IDENSPTRG00000011345
NameJOSD2
DescriptionJosephin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28853]
OrganismPan troglodytes (chimpanzee)
Synonym(s)sbbi54
Orthologs(s)21 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002661superior frontal gyrus
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.03e3
  • 1.03e3
  • 1.73e3
  • 2.19e3
  • 3.28e3
  • 3.51e3
95.84
  • 95.84
  • 93.03
  • 91.20
  • 86.80
  • 85.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0007222late adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.42e3
  • 1.42e3
  • 3.04e3
  • 4.22e3
  • 7.45e3
94.27
  • 94.27
  • 87.76
  • 83.03
  • 70.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
1.98e3
  • 1.98e3
  • 9.61e3
92.03
  • 92.03
  • 61.32
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000112sexually immature stage
2.27e3
  • 2.27e3
  • 2.58e3
  • 3.33e3
  • 3.44e3
  • 3.98e3
  • 4.08e3
90.87
  • 90.87
  • 89.62
  • 86.59
  • 86.17
  • 83.99
  • 83.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004252hindlimb stylopod muscle
  • UBERON:0000104life cycle
2.67e3
  • 2.67e3
89.25
  • 89.25
AEIR
  • AEIR
UBERON:0009834dorsolateral prefrontal cortex
  • UBERON:0018241prime adult stage
2.79e3
  • 2.79e3
88.79
  • 88.79
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0007222late adult stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
3.09e3
  • 3.09e3
  • 5.59e3
  • 5.67e3
  • 7.24e3
87.58
  • 87.58
  • 77.51
  • 77.16
  • 70.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002436primary visual cortex
  • UBERON:0000104life cycle
3.30e3
  • 3.30e3
86.73
  • 86.73
AEIR
  • AEIR
UBERON:0002129cerebellar cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
3.66e3
  • 3.66e3
  • 4.08e3
  • 4.92e3
85.28
  • 85.28
  • 83.58
  • 80.19
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000104life cycle
  • UBERON:0007222late adult stage
  • UBERON:0018241prime adult stage
3.83e3
  • 3.83e3
  • 4.30e3
  • 7.65e3
84.60
  • 84.60
  • 82.69
  • 69.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001225cortex of kidney
  • UBERON:0000104life cycle
4.19e3
  • 4.19e3
83.14
  • 83.14
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0018241prime adult stage
7.11e3
  • 7.11e3
71.38
  • 71.38
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.24e3
  • 8.24e3
  • 9.13e3
66.84
  • 66.84
  • 63.24
AEIR
  • AEIR
  • AEIR
CL:0000057fibroblast
  • UBERON:0000104life cycle
8.35e3
  • 8.35e3
66.37
  • 66.37
AEIR
  • AEIR
UBERON:0013541Brodmann (1909) area 10
  • UBERON:0018241prime adult stage
8.39e3
  • 8.39e3
66.22
  • 66.22
AEIR
  • AEIR
UBERON:0002371bone marrow
  • UBERON:0018241prime adult stage
8.84e3
  • 8.84e3
64.41
  • 64.41
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
9.06e3
  • 9.06e3
63.55
  • 63.55
AEIR
  • AEIR
UBERON:0001871temporal lobe
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
57.67
  • 57.67
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0018241prime adult stage
1.16e4
  • 1.16e4
53.46
  • 53.46
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
51.68
  • 51.68
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
50.17
  • 50.17
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
48.20
  • 48.20
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
46.55
  • 46.55
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Homininae2 species2 genesCompare expression
Catarrhini3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSPTRG00000011345.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSPTRG00000011345.

Cross-references

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